Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05195

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05190 and LU632_RS05195 are separated by 142 nucleotidesLU632_RS05195 and LU632_RS05200 are separated by 68 nucleotidesLU632_RS05200 and LU632_RS05205 are separated by 6 nucleotides LU632_RS05190: LU632_RS05190 - IS481 family transposase, at 1,005,377 to 1,006,417 _RS05190 LU632_RS05195: LU632_RS05195 - hypothetical protein, at 1,006,560 to 1,006,877 _RS05195 LU632_RS05200: LU632_RS05200 - toll/interleukin-1 receptor domain-containing protein, at 1,006,946 to 1,007,578 _RS05200 LU632_RS05205: LU632_RS05205 - hypothetical protein, at 1,007,585 to 1,007,893 _RS05205 Position (kb) 1006 1007Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1006.469 kb on + strandat 1006.522 kb on - strandat 1006.598 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.668 kb on - strand, within LU632_RS05195at 1006.668 kb on - strand, within LU632_RS05195at 1006.673 kb on + strand, within LU632_RS05195at 1006.697 kb on - strand, within LU632_RS05195at 1006.763 kb on + strand, within LU632_RS05195at 1006.764 kb on - strand, within LU632_RS05195at 1006.822 kb on - strand, within LU632_RS05195at 1006.928 kb on - strandat 1007.061 kb on + strand, within LU632_RS05200at 1007.092 kb on + strand, within LU632_RS05200at 1007.152 kb on + strand, within LU632_RS05200at 1007.169 kb on - strand, within LU632_RS05200at 1007.171 kb on - strand, within LU632_RS05200at 1007.172 kb on + strand, within LU632_RS05200at 1007.217 kb on + strand, within LU632_RS05200at 1007.284 kb on + strand, within LU632_RS05200at 1007.328 kb on + strand, within LU632_RS05200at 1007.338 kb on - strand, within LU632_RS05200at 1007.370 kb on + strand, within LU632_RS05200at 1007.405 kb on - strand, within LU632_RS05200at 1007.408 kb on + strand, within LU632_RS05200at 1007.409 kb on - strand, within LU632_RS05200at 1007.478 kb on + strand, within LU632_RS05200at 1007.478 kb on + strand, within LU632_RS05200at 1007.483 kb on - strand, within LU632_RS05200at 1007.484 kb on + strand, within LU632_RS05200at 1007.492 kb on + strand, within LU632_RS05200at 1007.583 kb on - strandat 1007.642 kb on + strand, within LU632_RS05205at 1007.643 kb on - strand, within LU632_RS05205at 1007.643 kb on - strand, within LU632_RS05205at 1007.687 kb on + strand, within LU632_RS05205at 1007.830 kb on - strand, within LU632_RS05205

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
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1,006,469 + -2.3
1,006,522 - -0.9
1,006,598 + LU632_RS05195 0.12 -0.3
1,006,667 + LU632_RS05195 0.34 -1.7
1,006,667 + LU632_RS05195 0.34 +1.3
1,006,667 + LU632_RS05195 0.34 -0.5
1,006,668 - LU632_RS05195 0.34 +0.4
1,006,668 - LU632_RS05195 0.34 +0.4
1,006,673 + LU632_RS05195 0.36 +1.0
1,006,697 - LU632_RS05195 0.43 +1.6
1,006,763 + LU632_RS05195 0.64 -1.4
1,006,764 - LU632_RS05195 0.64 +0.9
1,006,822 - LU632_RS05195 0.82 -0.8
1,006,928 - -1.0
1,007,061 + LU632_RS05200 0.18 +0.4
1,007,092 + LU632_RS05200 0.23 +0.0
1,007,152 + LU632_RS05200 0.33 +0.0
1,007,169 - LU632_RS05200 0.35 +0.2
1,007,171 - LU632_RS05200 0.36 -0.2
1,007,172 + LU632_RS05200 0.36 +2.0
1,007,217 + LU632_RS05200 0.43 -1.3
1,007,284 + LU632_RS05200 0.53 +1.6
1,007,328 + LU632_RS05200 0.60 -0.1
1,007,338 - LU632_RS05200 0.62 +2.8
1,007,370 + LU632_RS05200 0.67 +0.1
1,007,405 - LU632_RS05200 0.73 +1.0
1,007,408 + LU632_RS05200 0.73 +3.0
1,007,409 - LU632_RS05200 0.73 +0.1
1,007,478 + LU632_RS05200 0.84 +0.1
1,007,478 + LU632_RS05200 0.84 -0.3
1,007,483 - LU632_RS05200 0.85 +0.1
1,007,484 + LU632_RS05200 0.85 +0.3
1,007,492 + LU632_RS05200 0.86 -1.4
1,007,583 - -0.5
1,007,642 + LU632_RS05205 0.18 -0.4
1,007,643 - LU632_RS05205 0.19 -0.8
1,007,643 - LU632_RS05205 0.19 +0.3
1,007,687 + LU632_RS05205 0.33 -1.6
1,007,830 - LU632_RS05205 0.79 -0.2

Or see this region's nucleotide sequence