Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04575

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04560 and LU632_RS04565 are separated by 73 nucleotidesLU632_RS04565 and LU632_RS04570 overlap by 61 nucleotidesLU632_RS04570 and LU632_RS04575 are separated by 147 nucleotidesLU632_RS04575 and LU632_RS04580 are separated by 89 nucleotidesLU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066 _RS04560 LU632_RS04565: LU632_RS04565 - restriction endonuclease, at 895,140 to 895,556 _RS04565 LU632_RS04570: LU632_RS04570 - hypothetical protein, at 895,496 to 895,918 _RS04570 LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289 _RS04575 LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981 _RS04580 LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331 _RS04585 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1 2 3at 895.088 kb on + strandat 895.089 kb on - strandat 895.123 kb on - strandat 895.141 kb on + strandat 895.180 kb on + strandat 895.182 kb on + strand, within LU632_RS04565at 895.328 kb on + strand, within LU632_RS04565at 895.450 kb on + strand, within LU632_RS04565at 895.450 kb on + strand, within LU632_RS04565at 895.450 kb on + strand, within LU632_RS04565at 895.461 kb on - strand, within LU632_RS04565at 895.461 kb on - strand, within LU632_RS04565at 895.627 kb on + strand, within LU632_RS04570at 895.627 kb on + strand, within LU632_RS04570at 895.632 kb on - strand, within LU632_RS04570at 895.632 kb on - strand, within LU632_RS04570at 895.716 kb on + strand, within LU632_RS04570at 895.716 kb on + strand, within LU632_RS04570at 895.716 kb on + strand, within LU632_RS04570at 897.378 kb on + strandat 897.436 kb on + strandat 897.436 kb on + strandat 897.436 kb on + strandat 897.436 kb on + strandat 897.436 kb on + strandat 897.437 kb on - strandat 897.437 kb on - strandat 897.437 kb on - strandat 897.437 kb on - strandat 897.449 kb on + strand, within LU632_RS04580at 897.583 kb on - strand, within LU632_RS04580at 897.583 kb on - strand, within LU632_RS04580at 897.586 kb on - strand, within LU632_RS04580at 897.747 kb on - strand, within LU632_RS04580at 897.747 kb on - strand, within LU632_RS04580at 897.747 kb on - strand, within LU632_RS04580at 897.759 kb on + strand, within LU632_RS04580at 897.762 kb on - strand, within LU632_RS04580at 897.762 kb on - strand, within LU632_RS04580at 897.762 kb on - strand, within LU632_RS04580at 897.842 kb on + strand, within LU632_RS04580at 897.842 kb on + strand, within LU632_RS04580at 897.843 kb on - strand, within LU632_RS04580at 897.843 kb on - strand, within LU632_RS04580at 898.021 kb on + strand, within LU632_RS04585at 898.022 kb on - strand, within LU632_RS04585at 898.025 kb on + strand, within LU632_RS04585at 898.025 kb on + strand, within LU632_RS04585at 898.025 kb on + strand, within LU632_RS04585at 898.025 kb on + strand, within LU632_RS04585at 898.025 kb on + strand, within LU632_RS04585at 898.026 kb on - strand, within LU632_RS04585at 898.026 kb on - strand, within LU632_RS04585at 898.029 kb on + strand, within LU632_RS04585at 898.029 kb on + strand, within LU632_RS04585at 898.030 kb on - strand, within LU632_RS04585at 898.045 kb on - strand, within LU632_RS04585at 898.062 kb on - strand, within LU632_RS04585at 898.084 kb on + strand, within LU632_RS04585at 898.119 kb on - strand, within LU632_RS04585

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
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895,088 + +0.7
895,089 - +0.1
895,123 - -0.3
895,141 + -2.4
895,180 + -2.6
895,182 + LU632_RS04565 0.10 +0.7
895,328 + LU632_RS04565 0.45 -0.3
895,450 + LU632_RS04565 0.74 +0.4
895,450 + LU632_RS04565 0.74 +0.4
895,450 + LU632_RS04565 0.74 +0.7
895,461 - LU632_RS04565 0.77 -0.1
895,461 - LU632_RS04565 0.77 -0.5
895,627 + LU632_RS04570 0.31 -1.1
895,627 + LU632_RS04570 0.31 +3.6
895,632 - LU632_RS04570 0.32 +0.2
895,632 - LU632_RS04570 0.32 -0.2
895,716 + LU632_RS04570 0.52 +0.0
895,716 + LU632_RS04570 0.52 -2.0
895,716 + LU632_RS04570 0.52 -1.4
897,378 + -0.5
897,436 + -1.6
897,436 + +0.5
897,436 + -0.7
897,436 + +1.0
897,436 + +0.8
897,437 - -0.3
897,437 - -0.0
897,437 - +0.2
897,437 - +0.6
897,449 + LU632_RS04580 0.12 -0.1
897,583 - LU632_RS04580 0.34 +0.4
897,583 - LU632_RS04580 0.34 +1.0
897,586 - LU632_RS04580 0.34 +0.4
897,747 - LU632_RS04580 0.61 -1.2
897,747 - LU632_RS04580 0.61 -1.4
897,747 - LU632_RS04580 0.61 -1.7
897,759 + LU632_RS04580 0.63 +0.3
897,762 - LU632_RS04580 0.64 +0.0
897,762 - LU632_RS04580 0.64 -0.3
897,762 - LU632_RS04580 0.64 +0.8
897,842 + LU632_RS04580 0.77 +0.6
897,842 + LU632_RS04580 0.77 +0.0
897,843 - LU632_RS04580 0.77 -1.1
897,843 - LU632_RS04580 0.77 +1.1
898,021 + LU632_RS04585 0.11 -1.9
898,022 - LU632_RS04585 0.11 +0.9
898,025 + LU632_RS04585 0.12 -0.9
898,025 + LU632_RS04585 0.12 +1.2
898,025 + LU632_RS04585 0.12 +0.3
898,025 + LU632_RS04585 0.12 +0.0
898,025 + LU632_RS04585 0.12 +1.2
898,026 - LU632_RS04585 0.12 +0.4
898,026 - LU632_RS04585 0.12 +0.7
898,029 + LU632_RS04585 0.13 -2.4
898,029 + LU632_RS04585 0.13 +0.5
898,030 - LU632_RS04585 0.13 +0.8
898,045 - LU632_RS04585 0.18 +0.1
898,062 - LU632_RS04585 0.22 -0.5
898,084 + LU632_RS04585 0.29 +0.7
898,119 - LU632_RS04585 0.39 +0.8

Or see this region's nucleotide sequence