Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02385

Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02375 and LU632_RS02380 are separated by 37 nucleotidesLU632_RS02380 and iolE overlap by 1 nucleotidesiolE and LU632_RS02390 are separated by 399 nucleotides LU632_RS02375: LU632_RS02375 - Gfo/Idh/MocA family oxidoreductase, at 469,660 to 470,673 _RS02375 LU632_RS02380: LU632_RS02380 - sugar phosphate isomerase/epimerase, at 470,711 to 471,619 _RS02380 LU632_RS02385: iolE - myo-inosose-2 dehydratase, at 471,619 to 472,518 iolE LU632_RS02390: LU632_RS02390 - sugar porter family MFS transporter, at 472,918 to 474,420 _RS02390 Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 470.690 kb on - strandat 470.693 kb on + strandat 470.694 kb on - strandat 470.694 kb on - strandat 470.703 kb on + strandat 470.703 kb on + strandat 470.769 kb on - strandat 470.795 kb on + strandat 470.795 kb on + strandat 470.795 kb on + strandat 470.796 kb on - strandat 470.834 kb on + strand, within LU632_RS02380at 470.837 kb on - strand, within LU632_RS02380at 470.837 kb on - strand, within LU632_RS02380at 470.873 kb on + strand, within LU632_RS02380at 470.952 kb on + strand, within LU632_RS02380at 470.952 kb on + strand, within LU632_RS02380at 470.953 kb on - strand, within LU632_RS02380at 470.953 kb on - strand, within LU632_RS02380at 471.221 kb on + strand, within LU632_RS02380at 471.221 kb on + strand, within LU632_RS02380at 471.221 kb on + strand, within LU632_RS02380at 471.221 kb on + strand, within LU632_RS02380at 471.222 kb on - strand, within LU632_RS02380at 471.222 kb on - strand, within LU632_RS02380at 471.222 kb on - strand, within LU632_RS02380at 471.222 kb on - strand, within LU632_RS02380at 471.222 kb on - strand, within LU632_RS02380at 471.223 kb on + strand, within LU632_RS02380at 471.223 kb on + strand, within LU632_RS02380at 471.224 kb on - strand, within LU632_RS02380at 471.227 kb on + strand, within LU632_RS02380at 471.227 kb on + strand, within LU632_RS02380at 471.227 kb on + strand, within LU632_RS02380at 471.227 kb on + strand, within LU632_RS02380at 471.228 kb on - strand, within LU632_RS02380at 471.228 kb on - strand, within LU632_RS02380at 471.228 kb on - strand, within LU632_RS02380at 471.228 kb on - strand, within LU632_RS02380at 471.242 kb on - strand, within LU632_RS02380at 471.274 kb on - strand, within LU632_RS02380at 471.274 kb on - strand, within LU632_RS02380at 471.357 kb on - strand, within LU632_RS02380at 471.358 kb on + strand, within LU632_RS02380at 471.398 kb on + strand, within LU632_RS02380at 471.675 kb on + strandat 471.675 kb on + strandat 471.676 kb on - strandat 471.676 kb on - strandat 471.676 kb on - strandat 471.821 kb on + strand, within iolEat 471.822 kb on - strand, within iolEat 471.822 kb on - strand, within iolEat 471.825 kb on + strand, within iolEat 471.825 kb on + strand, within iolEat 471.825 kb on + strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 471.826 kb on - strand, within iolEat 472.036 kb on + strand, within iolEat 472.037 kb on - strand, within iolEat 472.037 kb on - strand, within iolEat 472.131 kb on + strand, within iolEat 472.250 kb on + strand, within iolEat 472.397 kb on + strand, within iolEat 472.411 kb on + strand, within iolEat 472.411 kb on + strand, within iolEat 472.472 kb on - strandat 472.513 kb on - strandat 472.517 kb on - strandat 472.517 kb on - strandat 472.884 kb on + strandat 472.885 kb on - strandat 472.890 kb on + strandat 472.894 kb on - strandat 472.914 kb on + strandat 472.914 kb on + strandat 472.917 kb on + strandat 472.917 kb on + strandat 472.933 kb on + strandat 472.934 kb on - strandat 473.012 kb on + strandat 473.039 kb on - strandat 473.103 kb on + strand, within LU632_RS02390at 473.104 kb on - strand, within LU632_RS02390at 473.104 kb on - strand, within LU632_RS02390at 473.159 kb on + strand, within LU632_RS02390at 473.332 kb on + strand, within LU632_RS02390at 473.359 kb on - strand, within LU632_RS02390at 473.377 kb on - strand, within LU632_RS02390at 473.377 kb on - strand, within LU632_RS02390at 473.419 kb on + strand, within LU632_RS02390at 473.422 kb on - strand, within LU632_RS02390

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
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470,690 - +0.4
470,693 + -1.3
470,694 - +0.4
470,694 - +0.1
470,703 + +0.2
470,703 + +0.0
470,769 - +1.1
470,795 + -0.5
470,795 + +0.8
470,795 + -0.1
470,796 - +0.2
470,834 + LU632_RS02380 0.14 +0.8
470,837 - LU632_RS02380 0.14 -2.5
470,837 - LU632_RS02380 0.14 +0.1
470,873 + LU632_RS02380 0.18 -1.6
470,952 + LU632_RS02380 0.27 -0.2
470,952 + LU632_RS02380 0.27 -0.1
470,953 - LU632_RS02380 0.27 +0.3
470,953 - LU632_RS02380 0.27 +0.3
471,221 + LU632_RS02380 0.56 +2.0
471,221 + LU632_RS02380 0.56 +0.3
471,221 + LU632_RS02380 0.56 -1.6
471,221 + LU632_RS02380 0.56 -1.4
471,222 - LU632_RS02380 0.56 +0.5
471,222 - LU632_RS02380 0.56 -2.0
471,222 - LU632_RS02380 0.56 +0.4
471,222 - LU632_RS02380 0.56 -0.3
471,222 - LU632_RS02380 0.56 -0.5
471,223 + LU632_RS02380 0.56 +0.3
471,223 + LU632_RS02380 0.56 -1.0
471,224 - LU632_RS02380 0.56 -0.1
471,227 + LU632_RS02380 0.57 -1.9
471,227 + LU632_RS02380 0.57 +1.0
471,227 + LU632_RS02380 0.57 +0.2
471,227 + LU632_RS02380 0.57 -0.6
471,228 - LU632_RS02380 0.57 +1.5
471,228 - LU632_RS02380 0.57 -0.6
471,228 - LU632_RS02380 0.57 -1.1
471,228 - LU632_RS02380 0.57 -0.4
471,242 - LU632_RS02380 0.58 -0.3
471,274 - LU632_RS02380 0.62 -0.8
471,274 - LU632_RS02380 0.62 +0.6
471,357 - LU632_RS02380 0.71 -0.5
471,358 + LU632_RS02380 0.71 +3.3
471,398 + LU632_RS02380 0.76 -0.3
471,675 + -0.5
471,675 + +0.9
471,676 - -0.3
471,676 - +2.9
471,676 - -0.6
471,821 + iolE LU632_RS02385 0.22 -0.5
471,822 - iolE LU632_RS02385 0.23 +1.5
471,822 - iolE LU632_RS02385 0.23 +0.9
471,825 + iolE LU632_RS02385 0.23 -0.9
471,825 + iolE LU632_RS02385 0.23 +2.1
471,825 + iolE LU632_RS02385 0.23 -1.1
471,826 - iolE LU632_RS02385 0.23 +0.3
471,826 - iolE LU632_RS02385 0.23 -0.4
471,826 - iolE LU632_RS02385 0.23 +0.1
471,826 - iolE LU632_RS02385 0.23 +1.3
471,826 - iolE LU632_RS02385 0.23 +1.0
471,826 - iolE LU632_RS02385 0.23 +0.9
471,826 - iolE LU632_RS02385 0.23 -0.9
471,826 - iolE LU632_RS02385 0.23 -0.7
471,826 - iolE LU632_RS02385 0.23 +0.9
471,826 - iolE LU632_RS02385 0.23 +1.4
472,036 + iolE LU632_RS02385 0.46 +0.8
472,037 - iolE LU632_RS02385 0.46 +1.8
472,037 - iolE LU632_RS02385 0.46 +0.1
472,131 + iolE LU632_RS02385 0.57 +0.1
472,250 + iolE LU632_RS02385 0.70 -2.5
472,397 + iolE LU632_RS02385 0.86 +1.0
472,411 + iolE LU632_RS02385 0.88 +0.7
472,411 + iolE LU632_RS02385 0.88 -0.5
472,472 - +0.6
472,513 - +0.9
472,517 - +0.8
472,517 - +0.7
472,884 + +1.1
472,885 - -0.2
472,890 + +2.3
472,894 - -0.1
472,914 + +0.4
472,914 + +1.3
472,917 + +0.7
472,917 + -0.9
472,933 + +1.3
472,934 - -1.2
473,012 + +0.2
473,039 - -0.2
473,103 + LU632_RS02390 0.12 +0.0
473,104 - LU632_RS02390 0.12 +1.2
473,104 - LU632_RS02390 0.12 +0.2
473,159 + LU632_RS02390 0.16 +0.4
473,332 + LU632_RS02390 0.28 +0.5
473,359 - LU632_RS02390 0.29 -1.4
473,377 - LU632_RS02390 0.31 +0.3
473,377 - LU632_RS02390 0.31 -0.6
473,419 + LU632_RS02390 0.33 +0.5
473,422 - LU632_RS02390 0.34 +0.1

Or see this region's nucleotide sequence