Experiment: Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01515 and LU632_RS01520 overlap by 4 nucleotides LU632_RS01520 and LU632_RS01525 overlap by 4 nucleotides LU632_RS01525 and LU632_RS01530 are separated by 331 nucleotides LU632_RS01530 and LU632_RS01535 are separated by 72 nucleotides
LU632_RS01515: LU632_RS01515 - 3'-5' exoribonuclease, at 306,934 to 307,494
_RS01515
LU632_RS01520: LU632_RS01520 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 307,491 to 308,333
_RS01520
LU632_RS01525: LU632_RS01525 - hypothetical protein, at 308,330 to 308,536
_RS01525
LU632_RS01530: LU632_RS01530 - hypothetical protein, at 308,868 to 309,110
_RS01530
LU632_RS01535: LU632_RS01535 - hypothetical protein, at 309,183 to 309,566
_RS01535
Position (kb) 308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.354 kb on - strand, within LU632_RS01515 at 307.354 kb on - strand, within LU632_RS01515 at 307.402 kb on - strand, within LU632_RS01515 at 307.538 kb on - strand at 307.546 kb on + strand at 307.546 kb on + strand at 307.554 kb on + strand at 307.555 kb on - strand at 307.632 kb on + strand, within LU632_RS01520 at 307.752 kb on + strand, within LU632_RS01520 at 307.753 kb on - strand, within LU632_RS01520 at 307.771 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520 at 307.860 kb on + strand, within LU632_RS01520 at 307.862 kb on + strand, within LU632_RS01520 at 307.863 kb on - strand, within LU632_RS01520 at 307.881 kb on - strand, within LU632_RS01520 at 307.881 kb on - strand, within LU632_RS01520 at 307.915 kb on - strand, within LU632_RS01520 at 308.034 kb on + strand, within LU632_RS01520 at 308.034 kb on + strand, within LU632_RS01520 at 308.329 kb on + strand at 308.330 kb on - strand at 308.505 kb on - strand, within LU632_RS01525 at 308.505 kb on - strand, within LU632_RS01525 at 308.592 kb on + strand at 308.593 kb on - strand at 308.611 kb on + strand at 308.611 kb on + strand at 308.612 kb on - strand at 308.613 kb on + strand at 308.614 kb on - strand at 308.667 kb on + strand at 308.668 kb on - strand at 308.728 kb on - strand at 308.810 kb on + strand at 308.882 kb on + strand at 308.883 kb on - strand at 308.883 kb on - strand at 309.031 kb on - strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.075 kb on - strand, within LU632_RS01530 at 309.203 kb on + strand at 309.255 kb on + strand, within LU632_RS01535 at 309.417 kb on + strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS) remove 307,354 - LU632_RS01515 0.75 -1.2 307,354 - LU632_RS01515 0.75 +2.0 307,402 - LU632_RS01515 0.83 -1.4 307,538 - -0.4 307,546 + +0.6 307,546 + +0.3 307,554 + +0.4 307,555 - +0.1 307,632 + LU632_RS01520 0.17 +0.1 307,752 + LU632_RS01520 0.31 -0.7 307,753 - LU632_RS01520 0.31 +2.0 307,771 + LU632_RS01520 0.33 -0.3 307,803 + LU632_RS01520 0.37 -0.1 307,803 + LU632_RS01520 0.37 -0.9 307,860 + LU632_RS01520 0.44 +0.8 307,862 + LU632_RS01520 0.44 -0.4 307,863 - LU632_RS01520 0.44 +0.7 307,881 - LU632_RS01520 0.46 -0.3 307,881 - LU632_RS01520 0.46 -0.5 307,915 - LU632_RS01520 0.50 +0.1 308,034 + LU632_RS01520 0.64 -2.1 308,034 + LU632_RS01520 0.64 +1.3 308,329 + -1.2 308,330 - -2.4 308,505 - LU632_RS01525 0.85 +1.0 308,505 - LU632_RS01525 0.85 +0.8 308,592 + +2.3 308,593 - +0.3 308,611 + +0.7 308,611 + +0.4 308,612 - -0.7 308,613 + -0.1 308,614 - +0.9 308,667 + -1.1 308,668 - +0.2 308,728 - -1.2 308,810 + -1.6 308,882 + -1.3 308,883 - +0.4 308,883 - -0.7 309,031 - LU632_RS01530 0.67 -0.3 309,051 + LU632_RS01530 0.75 -0.3 309,051 + LU632_RS01530 0.75 +0.3 309,051 + LU632_RS01530 0.75 -0.9 309,052 - LU632_RS01530 0.76 -1.7 309,052 - LU632_RS01530 0.76 +0.7 309,075 - LU632_RS01530 0.85 -1.1 309,203 + +2.3 309,255 + LU632_RS01535 0.19 +0.6 309,417 + LU632_RS01535 0.61 -0.3 309,418 - LU632_RS01535 0.61 +0.1 309,418 - LU632_RS01535 0.61 -0.1 309,418 - LU632_RS01535 0.61 +0.3 309,418 - LU632_RS01535 0.61 -2.5
Or see this region's nucleotide sequence