Experiment: Starch from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00815 and ABI39_RS00820 overlap by 4 nucleotides ABI39_RS00820 and ABI39_RS00825 are separated by 63 nucleotides
ABI39_RS00815: ABI39_RS00815 - rhamnogalacturonan lyase, at 245,575 to 247,482
_RS00815
ABI39_RS00820: ABI39_RS00820 - glycoside hydrolase family 28 protein, at 247,479 to 248,867
_RS00820
ABI39_RS00825: ABI39_RS00825 - glycosyl hydrolase 115 family protein, at 248,931 to 251,282
_RS00825
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1 at 246.502 kb on + strand, within ABI39_RS00815 at 246.596 kb on + strand, within ABI39_RS00815 at 246.597 kb on - strand, within ABI39_RS00815 at 246.597 kb on - strand, within ABI39_RS00815 at 246.647 kb on + strand, within ABI39_RS00815 at 246.688 kb on - strand, within ABI39_RS00815 at 246.688 kb on - strand, within ABI39_RS00815 at 246.688 kb on - strand, within ABI39_RS00815 at 246.843 kb on + strand, within ABI39_RS00815 at 246.846 kb on - strand, within ABI39_RS00815 at 246.868 kb on - strand, within ABI39_RS00815 at 246.904 kb on - strand, within ABI39_RS00815 at 246.987 kb on + strand, within ABI39_RS00815 at 246.987 kb on + strand, within ABI39_RS00815 at 247.021 kb on + strand, within ABI39_RS00815 at 247.024 kb on - strand, within ABI39_RS00815 at 247.043 kb on + strand, within ABI39_RS00815 at 247.043 kb on + strand, within ABI39_RS00815 at 247.043 kb on + strand, within ABI39_RS00815 at 247.044 kb on - strand, within ABI39_RS00815 at 247.044 kb on - strand, within ABI39_RS00815 at 247.106 kb on + strand, within ABI39_RS00815 at 247.188 kb on + strand, within ABI39_RS00815 at 247.280 kb on - strand, within ABI39_RS00815 at 247.294 kb on - strand at 247.333 kb on + strand at 247.400 kb on + strand at 247.505 kb on - strand at 247.709 kb on + strand, within ABI39_RS00820 at 247.885 kb on + strand, within ABI39_RS00820 at 247.962 kb on + strand, within ABI39_RS00820 at 248.125 kb on - strand, within ABI39_RS00820 at 248.125 kb on - strand, within ABI39_RS00820 at 248.159 kb on + strand, within ABI39_RS00820 at 248.159 kb on + strand, within ABI39_RS00820 at 248.162 kb on - strand, within ABI39_RS00820 at 248.169 kb on + strand, within ABI39_RS00820 at 248.170 kb on - strand, within ABI39_RS00820 at 248.239 kb on - strand, within ABI39_RS00820 at 248.385 kb on - strand, within ABI39_RS00820 at 248.438 kb on - strand, within ABI39_RS00820 at 248.453 kb on - strand, within ABI39_RS00820 at 248.459 kb on - strand, within ABI39_RS00820 at 248.527 kb on - strand, within ABI39_RS00820 at 248.634 kb on - strand, within ABI39_RS00820 at 248.667 kb on - strand, within ABI39_RS00820 at 248.699 kb on - strand, within ABI39_RS00820 at 248.804 kb on + strand at 248.805 kb on - strand at 248.805 kb on - strand at 248.948 kb on + strand at 248.949 kb on - strand at 249.103 kb on + strand at 249.237 kb on - strand, within ABI39_RS00825 at 249.361 kb on - strand, within ABI39_RS00825 at 249.431 kb on + strand, within ABI39_RS00825 at 249.432 kb on - strand, within ABI39_RS00825 at 249.477 kb on - strand, within ABI39_RS00825 at 249.581 kb on - strand, within ABI39_RS00825 at 249.648 kb on - strand, within ABI39_RS00825 at 249.665 kb on - strand, within ABI39_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction Starch from potato (C) remove 246,502 + ABI39_RS00815 0.49 -0.4 246,596 + ABI39_RS00815 0.54 +0.1 246,597 - ABI39_RS00815 0.54 +0.5 246,597 - ABI39_RS00815 0.54 +0.7 246,647 + ABI39_RS00815 0.56 +0.2 246,688 - ABI39_RS00815 0.58 +0.5 246,688 - ABI39_RS00815 0.58 +0.6 246,688 - ABI39_RS00815 0.58 -0.3 246,843 + ABI39_RS00815 0.66 +0.2 246,846 - ABI39_RS00815 0.67 +0.0 246,868 - ABI39_RS00815 0.68 -0.5 246,904 - ABI39_RS00815 0.70 +0.1 246,987 + ABI39_RS00815 0.74 +0.1 246,987 + ABI39_RS00815 0.74 +0.1 247,021 + ABI39_RS00815 0.76 -0.1 247,024 - ABI39_RS00815 0.76 +0.0 247,043 + ABI39_RS00815 0.77 +1.5 247,043 + ABI39_RS00815 0.77 -0.6 247,043 + ABI39_RS00815 0.77 +0.1 247,044 - ABI39_RS00815 0.77 +1.0 247,044 - ABI39_RS00815 0.77 -1.0 247,106 + ABI39_RS00815 0.80 +0.5 247,188 + ABI39_RS00815 0.85 -0.4 247,280 - ABI39_RS00815 0.89 +0.1 247,294 - +0.1 247,333 + +0.2 247,400 + +0.1 247,505 - -0.7 247,709 + ABI39_RS00820 0.17 +0.8 247,885 + ABI39_RS00820 0.29 -0.2 247,962 + ABI39_RS00820 0.35 -0.1 248,125 - ABI39_RS00820 0.47 -0.1 248,125 - ABI39_RS00820 0.47 -0.6 248,159 + ABI39_RS00820 0.49 -0.6 248,159 + ABI39_RS00820 0.49 -0.7 248,162 - ABI39_RS00820 0.49 -0.6 248,169 + ABI39_RS00820 0.50 +0.1 248,170 - ABI39_RS00820 0.50 -0.8 248,239 - ABI39_RS00820 0.55 -0.4 248,385 - ABI39_RS00820 0.65 +0.1 248,438 - ABI39_RS00820 0.69 +0.3 248,453 - ABI39_RS00820 0.70 -0.1 248,459 - ABI39_RS00820 0.71 -0.0 248,527 - ABI39_RS00820 0.75 -0.5 248,634 - ABI39_RS00820 0.83 -0.2 248,667 - ABI39_RS00820 0.86 +0.1 248,699 - ABI39_RS00820 0.88 -0.4 248,804 + +0.1 248,805 - +0.1 248,805 - +0.8 248,948 + -0.2 248,949 - -1.0 249,103 + -0.5 249,237 - ABI39_RS00825 0.13 +0.3 249,361 - ABI39_RS00825 0.18 +0.3 249,431 + ABI39_RS00825 0.21 +0.4 249,432 - ABI39_RS00825 0.21 -0.3 249,477 - ABI39_RS00825 0.23 +0.1 249,581 - ABI39_RS00825 0.28 +0.1 249,648 - ABI39_RS00825 0.30 +0.4 249,665 - ABI39_RS00825 0.31 -0.6
Or see this region's nucleotide sequence