Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25995

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
9,114	+				-1.9
9,114	+				-0.3
9,115	-				-1.5
9,115	-				-1.3
9,115	-				-2.1
9,137	+				+1.6
9,137	+				-0.2
9,137	+				-4.9
9,138	-				-2.5
9,148	+				+1.5
9,205	+				+2.2
9,205	+				+1.8
9,205	+				-2.7
9,289	+				-1.8
9,333	+				+0.3
9,333	+				-0.7
9,333	+				-0.2
9,334	-				-3.1
9,334	-				-0.4
9,506	+				+2.8
9,574	+		LU632_RS25990	0.19	-0.0
9,574	+		LU632_RS25990	0.19	+0.8
9,595	+		LU632_RS25990	0.24	-1.2
9,595	+		LU632_RS25990	0.24	+1.8
9,595	+		LU632_RS25990	0.24	-0.2
9,595	+		LU632_RS25990	0.24	-1.7
9,595	+		LU632_RS25990	0.24	+4.9
9,596	-		LU632_RS25990	0.25	+0.8
9,596	-		LU632_RS25990	0.25	-1.5
9,596	-		LU632_RS25990	0.25	-3.6
9,596	-		LU632_RS25990	0.25	-4.2
9,596	-		LU632_RS25990	0.25	+1.4
9,596	-		LU632_RS25990	0.25	+1.7
9,596	-		LU632_RS25990	0.25	-1.7
9,596	-		LU632_RS25990	0.25	-1.9
9,601	+		LU632_RS25990	0.26	-4.1
9,602	-		LU632_RS25990	0.26	-0.7
9,628	+		LU632_RS25990	0.32	-2.2
9,628	+		LU632_RS25990	0.32	-3.6
9,699	+		LU632_RS25990	0.50	-3.2
9,751	+		LU632_RS25990	0.62	-2.0
9,751	+		LU632_RS25990	0.62	+1.8
9,751	+		LU632_RS25990	0.62	+0.3
9,752	-		LU632_RS25990	0.62	-3.4
9,752	-		LU632_RS25990	0.62	-2.5
9,752	-		LU632_RS25990	0.62	+1.9
9,752	-		LU632_RS25990	0.62	-1.4
9,752	-		LU632_RS25990	0.62	+0.0
9,754	+		LU632_RS25990	0.63	+1.7
9,754	+		LU632_RS25990	0.63	+3.4
9,790	+		LU632_RS25990	0.71	+4.3
9,828	-		LU632_RS25990	0.81	-1.1
9,895	+				-0.0
9,899	-				-3.7
9,899	-				+0.4
9,910	+				-1.8
9,910	+				+1.0
9,910	+				-1.6
9,910	+				-2.8
9,911	-				+2.1
9,911	-				-2.2
9,911	-				-3.4
9,922	+				+2.5
9,923	-				-0.2
9,923	-				-1.4
9,928	+				-0.3
9,929	-				-1.4
10,012	-		LU632_RS25995	0.22	-4.9
10,112	+		LU632_RS25995	0.44	-1.7
10,123	+		LU632_RS25995	0.47	+2.0
10,124	-		LU632_RS25995	0.47	+1.2
10,124	-		LU632_RS25995	0.47	+0.4
10,132	-		LU632_RS25995	0.49	+2.0
10,135	+		LU632_RS25995	0.49	-3.4
10,136	-		LU632_RS25995	0.50	-0.9
10,158	+		LU632_RS25995	0.55	-2.1
10,158	+		LU632_RS25995	0.55	-2.4
10,158	+		LU632_RS25995	0.55	-1.4
10,158	+		LU632_RS25995	0.55	+2.6
10,254	+		LU632_RS25995	0.76	+0.8
10,254	+		LU632_RS25995	0.76	+0.3
10,317	+				-0.2
10,318	-				-4.0
10,318	-				-4.2
10,344	+				+2.6
10,344	+				-0.2
10,344	+				+1.6
10,344	+				-3.3
10,344	+				-3.9
10,345	-				-0.3
10,345	-				-2.3
10,345	-				-2.9
10,345	-				+0.8
10,345	-				-0.9
10,346	+				-1.1
10,346	+				+1.0
10,346	+				-1.0
10,346	+				-4.0
10,347	-				-0.7
10,347	-				+2.5
10,350	+				-3.1
10,350	+				+1.9
10,350	+				-0.4
10,350	+				-0.2
10,350	+				-0.2
10,351	-				-3.3
10,351	-				+0.6
10,450	+				-2.5
10,450	+				-0.4
10,450	+				+1.0
10,450	+				-4.0
10,498	-				+1.7
10,503	+				+0.6
10,503	+				+0.6
10,503	+				-0.6
10,503	+				+2.0
10,503	+				-2.1
10,503	+				+2.4
10,503	+				+1.0
10,503	+				-1.8
10,503	+				+1.0
10,503	+				-0.6
10,503	+				+1.7
10,503	+				+2.5
10,504	-				-1.3
10,504	-				-0.0
10,504	-				-3.1
10,504	-				+0.6
10,506	+				-1.1
10,614	-		LU632_RS26000	0.16	+2.0
10,625	+		LU632_RS26000	0.17	-1.8
10,633	+		LU632_RS26000	0.18	-3.8
10,674	+		LU632_RS26000	0.21	+0.6
10,674	+		LU632_RS26000	0.21	-3.6
10,674	+		LU632_RS26000	0.21	-1.7
10,674	+		LU632_RS26000	0.21	-1.3
10,674	+		LU632_RS26000	0.21	+0.1
10,674	+		LU632_RS26000	0.21	-0.7
10,674	+		LU632_RS26000	0.21	-4.2
10,674	+		LU632_RS26000	0.21	+1.8
10,674	+		LU632_RS26000	0.21	+0.9
10,675	-		LU632_RS26000	0.21	-1.3
10,675	-		LU632_RS26000	0.21	+1.1
10,675	-		LU632_RS26000	0.21	+1.8
10,684	+		LU632_RS26000	0.21	+0.7
10,685	-		LU632_RS26000	0.21	+2.7
10,686	+		LU632_RS26000	0.21	-1.1
10,686	+		LU632_RS26000	0.21	-2.0
10,686	+		LU632_RS26000	0.21	+0.7
10,686	+		LU632_RS26000	0.21	+2.4
10,686	+		LU632_RS26000	0.21	+2.6
10,686	+		LU632_RS26000	0.21	-0.5
10,687	-		LU632_RS26000	0.21	-2.5
10,687	-		LU632_RS26000	0.21	-0.9
10,687	-		LU632_RS26000	0.21	+0.4
10,687	-		LU632_RS26000	0.21	-0.8
10,687	-		LU632_RS26000	0.21	-3.0
10,705	-		LU632_RS26000	0.23	-0.6
10,705	-		LU632_RS26000	0.23	-2.7
10,705	-		LU632_RS26000	0.23	-1.6
10,774	+		LU632_RS26000	0.27	-2.1
10,783	+		LU632_RS26000	0.28	-2.5
10,794	+		LU632_RS26000	0.29	+0.3
10,795	-		LU632_RS26000	0.29	-3.2
10,795	-		LU632_RS26000	0.29	-0.6
10,795	-		LU632_RS26000	0.29	-3.4
10,928	-		LU632_RS26000	0.38	+0.8
10,977	+		LU632_RS26000	0.41	-0.3
10,977	+		LU632_RS26000	0.41	+0.1
10,978	-		LU632_RS26000	0.41	-3.9
10,998	+		LU632_RS26000	0.42	+0.8
10,999	-		LU632_RS26000	0.43	-2.8
10,999	-		LU632_RS26000	0.43	+1.2
11,026	+		LU632_RS26000	0.44	+1.9
11,048	+		LU632_RS26000	0.46	+2.6
11,056	+		LU632_RS26000	0.46	-1.2
11,109	+		LU632_RS26000	0.50	-3.8
11,109	+		LU632_RS26000	0.50	-2.3
11,109	+		LU632_RS26000	0.50	+1.8
11,109	+		LU632_RS26000	0.50	+0.1
11,109	+		LU632_RS26000	0.50	+2.3
11,109	+		LU632_RS26000	0.50	+2.6
11,110	-		LU632_RS26000	0.50	-1.9
11,110	-		LU632_RS26000	0.50	-2.1
11,110	-		LU632_RS26000	0.50	-3.8
11,110	-		LU632_RS26000	0.50	+2.8
11,110	-		LU632_RS26000	0.50	-0.2
11,110	-		LU632_RS26000	0.50	-2.7
11,110	-		LU632_RS26000	0.50	-0.2
11,110	-		LU632_RS26000	0.50	-3.4
11,110	-		LU632_RS26000	0.50	+4.3
11,110	-		LU632_RS26000	0.50	-0.4
11,110	-		LU632_RS26000	0.50	-0.6
11,118	-		LU632_RS26000	0.51	-1.0
11,166	+		LU632_RS26000	0.54	+3.7
11,167	-		LU632_RS26000	0.54	-1.9