Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25540

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25535 and LU632_RS25540 are separated by 48 nucleotidesLU632_RS25540 and LU632_RS25545 are separated by 135 nucleotidesLU632_RS25545 and LU632_RS25550 are separated by 194 nucleotides LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690 _RS25535 LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317 _RS25540 LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623 _RS25545 LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318 _RS25550 Position (kb) 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 38.750 kb on + strand, within LU632_RS25535at 38.847 kb on - strand, within LU632_RS25535at 39.008 kb on + strand, within LU632_RS25535at 39.008 kb on + strand, within LU632_RS25535at 39.008 kb on + strand, within LU632_RS25535at 39.009 kb on - strand, within LU632_RS25535at 39.009 kb on - strand, within LU632_RS25535at 39.009 kb on - strand, within LU632_RS25535at 39.009 kb on - strand, within LU632_RS25535at 39.009 kb on - strand, within LU632_RS25535at 39.017 kb on + strand, within LU632_RS25535at 39.017 kb on + strand, within LU632_RS25535at 39.017 kb on + strand, within LU632_RS25535at 39.020 kb on + strand, within LU632_RS25535at 39.026 kb on - strand, within LU632_RS25535at 39.091 kb on - strand, within LU632_RS25535at 39.159 kb on - strand, within LU632_RS25535at 39.159 kb on - strand, within LU632_RS25535at 39.163 kb on - strand, within LU632_RS25535at 39.163 kb on - strand, within LU632_RS25535at 39.163 kb on - strand, within LU632_RS25535at 39.194 kb on - strand, within LU632_RS25535at 39.210 kb on + strand, within LU632_RS25535at 39.210 kb on + strand, within LU632_RS25535at 39.210 kb on + strand, within LU632_RS25535at 39.210 kb on + strand, within LU632_RS25535at 39.211 kb on - strand, within LU632_RS25535at 39.211 kb on - strand, within LU632_RS25535at 39.281 kb on - strand, within LU632_RS25535at 39.281 kb on - strand, within LU632_RS25535at 39.283 kb on - strand, within LU632_RS25535at 39.283 kb on - strand, within LU632_RS25535at 39.283 kb on - strand, within LU632_RS25535at 39.283 kb on - strand, within LU632_RS25535at 39.300 kb on + strand, within LU632_RS25535at 39.337 kb on - strand, within LU632_RS25535at 39.337 kb on - strand, within LU632_RS25535at 39.468 kb on + strand, within LU632_RS25535at 39.468 kb on + strand, within LU632_RS25535at 39.469 kb on - strand, within LU632_RS25535at 39.469 kb on - strand, within LU632_RS25535at 39.607 kb on + strandat 39.607 kb on + strandat 39.664 kb on + strandat 39.665 kb on - strandat 39.665 kb on - strandat 39.665 kb on - strandat 39.670 kb on - strandat 39.670 kb on - strandat 39.675 kb on + strandat 39.676 kb on - strandat 39.677 kb on + strandat 39.701 kb on + strandat 39.701 kb on + strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.703 kb on + strandat 39.703 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.719 kb on + strandat 39.719 kb on + strandat 39.720 kb on - strandat 39.720 kb on - strandat 39.736 kb on + strandat 39.737 kb on - strandat 39.737 kb on - strandat 39.737 kb on - strandat 39.809 kb on + strand, within LU632_RS25540at 39.809 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 40.040 kb on + strand, within LU632_RS25540at 40.312 kb on - strandat 40.315 kb on + strandat 40.321 kb on + strandat 40.326 kb on + strandat 40.326 kb on + strandat 40.354 kb on + strandat 40.372 kb on + strandat 40.373 kb on - strandat 40.455 kb on - strandat 40.461 kb on + strandat 40.470 kb on - strand, within LU632_RS25545at 40.494 kb on + strand, within LU632_RS25545at 40.665 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.697 kb on - strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.720 kb on - strandat 40.730 kb on + strandat 40.760 kb on + strandat 40.761 kb on - strandat 40.768 kb on + strandat 40.768 kb on + strandat 40.769 kb on - strandat 40.769 kb on - strandat 40.782 kb on - strandat 40.852 kb on - strandat 40.901 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
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38,750 + LU632_RS25535 0.18 -0.5
38,847 - LU632_RS25535 0.26 +0.9
39,008 + LU632_RS25535 0.40 -2.1
39,008 + LU632_RS25535 0.40 +0.5
39,008 + LU632_RS25535 0.40 -1.5
39,009 - LU632_RS25535 0.40 -0.0
39,009 - LU632_RS25535 0.40 +2.1
39,009 - LU632_RS25535 0.40 +3.0
39,009 - LU632_RS25535 0.40 -0.6
39,009 - LU632_RS25535 0.40 +0.0
39,017 + LU632_RS25535 0.41 -1.5
39,017 + LU632_RS25535 0.41 -1.9
39,017 + LU632_RS25535 0.41 +0.4
39,020 + LU632_RS25535 0.41 -1.3
39,026 - LU632_RS25535 0.42 -0.3
39,091 - LU632_RS25535 0.48 -1.8
39,159 - LU632_RS25535 0.54 +0.5
39,159 - LU632_RS25535 0.54 +1.6
39,163 - LU632_RS25535 0.54 -2.5
39,163 - LU632_RS25535 0.54 -0.4
39,163 - LU632_RS25535 0.54 -1.9
39,194 - LU632_RS25535 0.57 +0.2
39,210 + LU632_RS25535 0.58 +0.5
39,210 + LU632_RS25535 0.58 -1.9
39,210 + LU632_RS25535 0.58 +1.3
39,210 + LU632_RS25535 0.58 +0.2
39,211 - LU632_RS25535 0.58 -2.3
39,211 - LU632_RS25535 0.58 -1.0
39,281 - LU632_RS25535 0.64 +0.3
39,281 - LU632_RS25535 0.64 +0.2
39,283 - LU632_RS25535 0.64 -2.6
39,283 - LU632_RS25535 0.64 +1.5
39,283 - LU632_RS25535 0.64 -0.2
39,283 - LU632_RS25535 0.64 -0.5
39,300 + LU632_RS25535 0.66 -1.3
39,337 - LU632_RS25535 0.69 -3.0
39,337 - LU632_RS25535 0.69 -4.1
39,468 + LU632_RS25535 0.81 +0.5
39,468 + LU632_RS25535 0.81 -1.9
39,469 - LU632_RS25535 0.81 -1.8
39,469 - LU632_RS25535 0.81 +1.2
39,607 + -1.0
39,607 + -2.4
39,664 + -0.8
39,665 - -1.1
39,665 - -0.2
39,665 - +0.0
39,670 - +3.6
39,670 - +1.7
39,675 + -0.3
39,676 - +0.9
39,677 + +1.4
39,701 + -1.4
39,701 + -2.4
39,702 - -2.8
39,702 - +1.2
39,702 - -2.0
39,702 - +0.7
39,702 - -0.3
39,702 - -1.8
39,702 - -4.2
39,703 + +1.7
39,703 - +0.8
39,704 - +1.3
39,704 - +2.1
39,704 - -1.3
39,704 - -2.0
39,719 + -0.5
39,719 + -0.7
39,720 - +0.5
39,720 - +2.1
39,736 + +0.0
39,737 - -0.5
39,737 - +1.0
39,737 - -1.5
39,809 + LU632_RS25540 0.12 -1.5
39,809 - LU632_RS25540 0.12 +3.0
39,810 - LU632_RS25540 0.12 +0.0
39,810 - LU632_RS25540 0.12 -1.3
39,810 - LU632_RS25540 0.12 -1.8
40,040 + LU632_RS25540 0.52 +0.0
40,312 - +1.0
40,315 + -3.1
40,321 + -1.0
40,326 + +0.7
40,326 + +0.6
40,354 + +0.3
40,372 + +0.1
40,373 - -4.0
40,455 - -2.3
40,461 + +0.5
40,470 - LU632_RS25545 0.10 +1.6
40,494 + LU632_RS25545 0.24 +0.9
40,665 + -2.2
40,674 + -1.1
40,674 + -3.5
40,674 + -2.0
40,675 - -2.9
40,675 - -3.5
40,675 - -1.0
40,675 - -0.8
40,675 - -1.0
40,675 - -1.6
40,675 - -0.7
40,675 - -2.1
40,696 + +1.9
40,696 + -0.3
40,696 + +0.6
40,697 - -0.8
40,713 + -2.7
40,713 + +2.7
40,719 + +0.2
40,719 + -0.4
40,719 + +2.0
40,720 - -0.8
40,730 + -1.0
40,760 + +0.6
40,761 - +0.4
40,768 + -2.5
40,768 + +2.6
40,769 - +1.2
40,769 - -3.9
40,782 - -1.7
40,852 - +1.0
40,901 - LU632_RS25550 0.17 -0.7
40,912 - LU632_RS25550 0.19 +0.4
40,912 - LU632_RS25550 0.19 +0.9
40,913 + LU632_RS25550 0.19 -1.3
40,913 + LU632_RS25550 0.19 +2.3
40,914 - LU632_RS25550 0.19 +1.1
40,914 - LU632_RS25550 0.19 +0.5
40,920 - LU632_RS25550 0.20 +4.5
40,920 - LU632_RS25550 0.20 +0.3
40,920 - LU632_RS25550 0.20 -0.8
40,920 - LU632_RS25550 0.20 +2.5
40,920 - LU632_RS25550 0.20 -2.3
40,920 - LU632_RS25550 0.20 +0.9
40,922 - LU632_RS25550 0.21 -0.7
40,922 - LU632_RS25550 0.21 -1.6
41,204 - LU632_RS25550 0.77 -0.3
41,204 - LU632_RS25550 0.77 -0.3

Or see this region's nucleotide sequence