Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25005 and LU632_RS25010 overlap by 8 nucleotides LU632_RS25010 and LU632_RS25015 overlap by 4 nucleotides LU632_RS25015 and LU632_RS25020 overlap by 4 nucleotides LU632_RS25020 and LU632_RS25025 overlap by 4 nucleotides LU632_RS25025 and LU632_RS25030 overlap by 1 nucleotides
LU632_RS25005: LU632_RS25005 - hypothetical protein, at 4,768,872 to 4,769,138
_RS25005
LU632_RS25010: LU632_RS25010 - hypothetical protein, at 4,769,131 to 4,769,613
_RS25010
LU632_RS25015: LU632_RS25015 - hypothetical protein, at 4,769,610 to 4,770,050
_RS25015
LU632_RS25020: LU632_RS25020 - hypothetical protein, at 4,770,047 to 4,770,295
_RS25020
LU632_RS25025: LU632_RS25025 - hypothetical protein, at 4,770,292 to 4,771,098
_RS25025
LU632_RS25030: LU632_RS25030 - hypothetical protein, at 4,771,098 to 4,771,310
_RS25030
Position (kb) 4770
4771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4769.093 kb on + strand, within LU632_RS25005 at 4769.093 kb on + strand, within LU632_RS25005 at 4769.177 kb on - strand at 4769.250 kb on + strand, within LU632_RS25010 at 4769.268 kb on + strand, within LU632_RS25010 at 4769.268 kb on + strand, within LU632_RS25010 at 4769.426 kb on + strand, within LU632_RS25010 at 4769.427 kb on - strand, within LU632_RS25010 at 4769.526 kb on + strand, within LU632_RS25010 at 4769.526 kb on + strand, within LU632_RS25010 at 4769.527 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.614 kb on + strand at 4769.614 kb on + strand at 4769.614 kb on + strand at 4769.615 kb on - strand at 4769.624 kb on + strand at 4769.625 kb on - strand at 4769.760 kb on + strand, within LU632_RS25015 at 4769.769 kb on - strand, within LU632_RS25015 at 4769.806 kb on - strand, within LU632_RS25015 at 4769.807 kb on + strand, within LU632_RS25015 at 4769.807 kb on + strand, within LU632_RS25015 at 4769.808 kb on - strand, within LU632_RS25015 at 4769.969 kb on + strand, within LU632_RS25015 at 4769.996 kb on + strand, within LU632_RS25015 at 4770.043 kb on + strand at 4770.044 kb on - strand at 4770.054 kb on + strand at 4770.055 kb on - strand at 4770.055 kb on - strand at 4770.098 kb on + strand, within LU632_RS25020 at 4770.315 kb on + strand at 4770.316 kb on - strand at 4770.348 kb on + strand at 4770.348 kb on + strand at 4770.349 kb on - strand at 4770.349 kb on - strand at 4770.453 kb on + strand, within LU632_RS25025 at 4770.553 kb on + strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.559 kb on - strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.689 kb on - strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.855 kb on + strand, within LU632_RS25025 at 4770.926 kb on + strand, within LU632_RS25025 at 4771.018 kb on + strand at 4771.018 kb on + strand at 4771.020 kb on + strand at 4771.064 kb on - strand at 4771.096 kb on + strand at 4771.096 kb on + strand at 4771.135 kb on + strand, within LU632_RS25030 at 4771.204 kb on - strand, within LU632_RS25030 at 4771.224 kb on - strand, within LU632_RS25030
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3) remove 4,769,093 + LU632_RS25005 0.83 -2.4 4,769,093 + LU632_RS25005 0.83 -1.2 4,769,177 - +0.2 4,769,250 + LU632_RS25010 0.25 -3.5 4,769,268 + LU632_RS25010 0.28 +0.5 4,769,268 + LU632_RS25010 0.28 -2.3 4,769,426 + LU632_RS25010 0.61 -0.2 4,769,427 - LU632_RS25010 0.61 -2.4 4,769,526 + LU632_RS25010 0.82 -0.3 4,769,526 + LU632_RS25010 0.82 +1.7 4,769,527 - LU632_RS25010 0.82 -2.6 4,769,533 - LU632_RS25010 0.83 +1.9 4,769,533 - LU632_RS25010 0.83 -1.4 4,769,533 - LU632_RS25010 0.83 -3.3 4,769,614 + +0.6 4,769,614 + -0.6 4,769,614 + -1.1 4,769,615 - +3.9 4,769,624 + +1.4 4,769,625 - +0.4 4,769,760 + LU632_RS25015 0.34 -0.6 4,769,769 - LU632_RS25015 0.36 -2.2 4,769,806 - LU632_RS25015 0.44 +0.7 4,769,807 + LU632_RS25015 0.45 +0.7 4,769,807 + LU632_RS25015 0.45 -1.8 4,769,808 - LU632_RS25015 0.45 -2.0 4,769,969 + LU632_RS25015 0.81 +3.0 4,769,996 + LU632_RS25015 0.88 -1.8 4,770,043 + +0.0 4,770,044 - +0.4 4,770,054 + -2.1 4,770,055 - -3.4 4,770,055 - -1.6 4,770,098 + LU632_RS25020 0.20 -3.2 4,770,315 + -2.2 4,770,316 - +0.6 4,770,348 + -0.7 4,770,348 + -1.0 4,770,349 - -0.6 4,770,349 - +1.3 4,770,453 + LU632_RS25025 0.20 -0.7 4,770,553 + LU632_RS25025 0.32 +0.2 4,770,554 - LU632_RS25025 0.32 -1.8 4,770,554 - LU632_RS25025 0.32 -1.6 4,770,554 - LU632_RS25025 0.32 +0.4 4,770,559 - LU632_RS25025 0.33 +1.2 4,770,688 + LU632_RS25025 0.49 +0.4 4,770,688 + LU632_RS25025 0.49 +2.3 4,770,689 - LU632_RS25025 0.49 +1.4 4,770,840 + LU632_RS25025 0.68 -1.3 4,770,840 + LU632_RS25025 0.68 +2.1 4,770,840 + LU632_RS25025 0.68 -0.6 4,770,840 + LU632_RS25025 0.68 +0.2 4,770,840 + LU632_RS25025 0.68 +3.4 4,770,840 + LU632_RS25025 0.68 +0.6 4,770,840 + LU632_RS25025 0.68 -0.4 4,770,841 - LU632_RS25025 0.68 -2.3 4,770,841 - LU632_RS25025 0.68 -0.5 4,770,841 - LU632_RS25025 0.68 -0.3 4,770,841 - LU632_RS25025 0.68 +1.2 4,770,841 - LU632_RS25025 0.68 +0.9 4,770,841 - LU632_RS25025 0.68 +1.5 4,770,841 - LU632_RS25025 0.68 +2.1 4,770,841 - LU632_RS25025 0.68 +0.6 4,770,841 - LU632_RS25025 0.68 +3.0 4,770,855 + LU632_RS25025 0.70 +0.1 4,770,926 + LU632_RS25025 0.79 -1.8 4,771,018 + +1.3 4,771,018 + +0.0 4,771,020 + -0.9 4,771,064 - +2.1 4,771,096 + -1.4 4,771,096 + -0.5 4,771,135 + LU632_RS25030 0.17 -1.8 4,771,204 - LU632_RS25030 0.50 +2.7 4,771,224 - LU632_RS25030 0.59 +1.4
Or see this region's nucleotide sequence