Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14580

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmnmA and hflD are separated by 60 nucleotideshflD and purB are separated by 20 nucleotides LU632_RS14575: mnmA - tRNA 2-thiouridine(34) synthase MnmA, at 2,770,962 to 2,772,065 mnmA LU632_RS14580: hflD - high frequency lysogenization protein HflD, at 2,772,126 to 2,772,770 hflD LU632_RS14585: purB - adenylosuccinate lyase, at 2,772,791 to 2,774,161 purB Position (kb) 2772 2773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2772.141 kb on + strandat 2772.148 kb on + strandat 2772.148 kb on + strandat 2772.296 kb on + strand, within hflDat 2772.296 kb on + strand, within hflDat 2772.297 kb on - strand, within hflDat 2772.496 kb on + strand, within hflDat 2772.496 kb on + strand, within hflDat 2772.496 kb on + strand, within hflDat 2772.507 kb on - strand, within hflDat 2772.511 kb on + strand, within hflDat 2772.534 kb on + strand, within hflDat 2772.535 kb on - strand, within hflDat 2772.547 kb on + strand, within hflDat 2772.548 kb on - strand, within hflD

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
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2,772,141 + -1.2
2,772,148 + -0.8
2,772,148 + -0.5
2,772,296 + hflD LU632_RS14580 0.26 -1.9
2,772,296 + hflD LU632_RS14580 0.26 -1.1
2,772,297 - hflD LU632_RS14580 0.27 -1.6
2,772,496 + hflD LU632_RS14580 0.57 -3.8
2,772,496 + hflD LU632_RS14580 0.57 -2.3
2,772,496 + hflD LU632_RS14580 0.57 +1.1
2,772,507 - hflD LU632_RS14580 0.59 -2.2
2,772,511 + hflD LU632_RS14580 0.60 -1.4
2,772,534 + hflD LU632_RS14580 0.63 -2.1
2,772,535 - hflD LU632_RS14580 0.63 -1.2
2,772,547 + hflD LU632_RS14580 0.65 -1.8
2,772,548 - hflD LU632_RS14580 0.65 -2.8

Or see this region's nucleotide sequence