Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10785

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
2,055,604	-		LU632_RS10775	0.83	+2.2
2,055,612	-		LU632_RS10775	0.84	+0.6
2,055,618	-		LU632_RS10775	0.84	+2.1
2,055,701	-				+3.5
2,055,780	+				+2.3
2,055,825	-				-2.5
2,055,832	+				-2.2
2,055,833	-				-3.1
2,055,833	-				+2.6
2,055,833	-				-5.1
2,055,940	+		LU632_RS10780	0.21	-0.6
2,055,941	-		LU632_RS10780	0.21	-2.5
2,056,037	+		LU632_RS10780	0.33	+1.0
2,056,037	+		LU632_RS10780	0.33	-2.2
2,056,038	-		LU632_RS10780	0.33	-2.3
2,056,038	-		LU632_RS10780	0.33	-1.5
2,056,038	-		LU632_RS10780	0.33	-2.7
2,056,085	-		LU632_RS10780	0.39	-0.7
2,056,086	+		LU632_RS10780	0.40	-1.3
2,056,092	-		LU632_RS10780	0.40	-0.1
2,056,133	+		LU632_RS10780	0.46	-1.2
2,056,133	+		LU632_RS10780	0.46	+0.7
2,056,174	+		LU632_RS10780	0.51	+0.3
2,056,175	-		LU632_RS10780	0.51	+1.6
2,056,177	-		LU632_RS10780	0.51	-2.8
2,056,277	-		LU632_RS10780	0.64	+0.3
2,056,408	+		LU632_RS10780	0.81	+0.9
2,056,408	+		LU632_RS10780	0.81	-0.7
2,056,408	+		LU632_RS10780	0.81	-0.5
2,056,484	+				-1.1
2,056,485	-				-0.7
2,056,508	-				-0.7
2,056,508	-				-2.9
2,056,535	-				-3.1
2,056,542	+				+4.7
2,056,543	-				-0.8
2,056,546	+				-0.6
2,056,547	-				-2.2
2,056,586	+				-4.0
2,056,587	-				+0.3
2,056,607	+				-2.4
2,056,608	-				-2.2
2,056,668	+				-3.2
2,056,668	+				-4.3
2,056,668	+				-1.0
2,056,731	+	tagH	LU632_RS10785	0.15	-2.5
2,056,732	-	tagH	LU632_RS10785	0.15	-1.2
2,056,913	+	tagH	LU632_RS10785	0.31	-0.1
2,056,914	-	tagH	LU632_RS10785	0.31	-3.6
2,056,963	-	tagH	LU632_RS10785	0.35	-0.2
2,057,109	+	tagH	LU632_RS10785	0.48	-2.5
2,057,109	+	tagH	LU632_RS10785	0.48	-0.7
2,057,112	+	tagH	LU632_RS10785	0.48	-2.1
2,057,113	-	tagH	LU632_RS10785	0.48	-3.0
2,057,113	-	tagH	LU632_RS10785	0.48	-2.9
2,057,113	-	tagH	LU632_RS10785	0.48	+1.0
2,057,196	+	tagH	LU632_RS10785	0.55	-2.2
2,057,196	+	tagH	LU632_RS10785	0.55	-2.5
2,057,196	+	tagH	LU632_RS10785	0.55	-3.1
2,057,197	-	tagH	LU632_RS10785	0.55	-0.7
2,057,197	-	tagH	LU632_RS10785	0.55	-0.2
2,057,197	-	tagH	LU632_RS10785	0.55	-1.9
2,057,225	-	tagH	LU632_RS10785	0.58	-1.3
2,057,451	+	tagH	LU632_RS10785	0.77	-1.6
2,057,452	-	tagH	LU632_RS10785	0.77	-2.8
2,057,452	-	tagH	LU632_RS10785	0.77	-2.3
2,057,452	-	tagH	LU632_RS10785	0.77	-5.0
2,057,502	+	tagH	LU632_RS10785	0.82	-1.0
2,057,503	-	tagH	LU632_RS10785	0.82	-3.1
2,057,503	-	tagH	LU632_RS10785	0.82	+0.3
2,057,554	-	tagH	LU632_RS10785	0.86	-1.7
2,057,563	-	tagH	LU632_RS10785	0.87	+1.0
2,057,563	-	tagH	LU632_RS10785	0.87	-2.9
2,057,589	+	tagH	LU632_RS10785	0.89	-1.4
2,057,589	+	tagH	LU632_RS10785	0.89	-3.0
2,057,589	+	tagH	LU632_RS10785	0.89	-2.2
2,057,590	-	tagH	LU632_RS10785	0.89	-1.6
2,057,673	+				-2.8
2,057,706	+				-1.7
2,057,768	+				-2.5
2,057,768	+				-1.8
2,057,820	+				-0.4
2,057,843	+	tagF	LU632_RS10790	0.12	+1.0
2,057,843	+	tagF	LU632_RS10790	0.12	-1.1
2,057,844	-	tagF	LU632_RS10790	0.12	-2.4
2,057,855	+	tagF	LU632_RS10790	0.14	-1.8
2,057,856	-	tagF	LU632_RS10790	0.14	-2.6
2,057,856	-	tagF	LU632_RS10790	0.14	-3.1
2,057,905	+	tagF	LU632_RS10790	0.21	-2.0
2,057,905	+	tagF	LU632_RS10790	0.21	+0.6
2,057,906	-	tagF	LU632_RS10790	0.21	-3.6
2,057,906	-	tagF	LU632_RS10790	0.21	-0.6
2,057,967	+	tagF	LU632_RS10790	0.30	-4.2
2,057,993	+	tagF	LU632_RS10790	0.34	-1.5
2,057,993	+	tagF	LU632_RS10790	0.34	-0.7
2,058,136	-	tagF	LU632_RS10790	0.54	-0.7
2,058,136	-	tagF	LU632_RS10790	0.54	-4.7
2,058,237	+	tagF	LU632_RS10790	0.69	-1.5
2,058,331	+	tagF	LU632_RS10790	0.82	-0.0
2,058,357	-	tagF	LU632_RS10790	0.86	-4.6
2,058,428	-				-5.1
2,058,459	+				-0.7
2,058,459	+				+1.3
2,058,460	-				+2.6
2,058,506	+				-3.6
2,058,530	+				-2.2
2,058,530	+				-3.5
2,058,535	+				-0.9
2,058,639	-				+1.0