Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09370

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
1,772,614	+		LU632_RS09360	0.80	+0.0
1,772,614	+		LU632_RS09360	0.80	+4.0
1,772,615	-		LU632_RS09360	0.80	-0.2
1,772,615	-		LU632_RS09360	0.80	+1.6
1,772,615	-		LU632_RS09360	0.80	+1.2
1,772,659	+		LU632_RS09360	0.84	-0.3
1,772,659	+		LU632_RS09360	0.84	+0.7
1,772,839	+				-0.1
1,772,840	-				-0.5
1,772,857	+				-1.3
1,772,857	+				-0.5
1,772,857	+				-1.8
1,772,858	-				-1.1
1,772,858	-				+1.6
1,772,866	+				-1.5
1,772,932	+				-1.9
1,772,933	-				+0.6
1,772,934	+				-2.7
1,772,935	-				-2.2
1,772,949	-		LU632_RS09365	0.12	+1.1
1,772,949	-		LU632_RS09365	0.12	+1.0
1,772,949	-		LU632_RS09365	0.12	-0.5
1,772,952	+		LU632_RS09365	0.12	+1.3
1,772,952	+		LU632_RS09365	0.12	-0.1
1,772,952	+		LU632_RS09365	0.12	+1.5
1,773,065	+		LU632_RS09365	0.28	-1.8
1,773,066	-		LU632_RS09365	0.28	-0.4
1,773,069	+		LU632_RS09365	0.29	-0.5
1,773,069	+		LU632_RS09365	0.29	-1.1
1,773,070	-		LU632_RS09365	0.29	-2.8
1,773,109	+		LU632_RS09365	0.34	+2.4
1,773,187	+		LU632_RS09365	0.45	+1.8
1,773,187	+		LU632_RS09365	0.45	+0.3
1,773,188	-		LU632_RS09365	0.45	-0.2
1,773,193	+		LU632_RS09365	0.46	+0.5
1,773,194	-		LU632_RS09365	0.46	+0.1
1,773,194	-		LU632_RS09365	0.46	+0.4
1,773,265	+		LU632_RS09365	0.56	+2.2
1,773,306	+		LU632_RS09365	0.62	+0.6
1,773,306	+		LU632_RS09365	0.62	-1.5
1,773,307	-		LU632_RS09365	0.62	+1.0
1,773,307	-		LU632_RS09365	0.62	+0.7
1,773,307	-		LU632_RS09365	0.62	+0.7
1,773,316	-		LU632_RS09365	0.63	+0.8
1,773,498	-		LU632_RS09365	0.89	-2.8
1,773,509	-				+0.7
1,773,509	-				-2.8
1,773,509	-				+0.4
1,773,651	+				-1.2
1,773,651	+				-1.1
1,773,652	-				+1.2
1,773,652	-				-1.6
1,773,652	-				+0.5
1,773,652	-				+0.6
1,773,652	-				-0.7
1,773,750	+		LU632_RS09370	0.14	+0.1
1,773,751	-		LU632_RS09370	0.14	+0.7
1,773,751	-		LU632_RS09370	0.14	-1.1
1,773,757	-		LU632_RS09370	0.14	-1.9
1,773,784	+		LU632_RS09370	0.16	-0.9
1,773,794	-		LU632_RS09370	0.17	-0.7
1,773,855	+		LU632_RS09370	0.22	+0.2
1,773,856	-		LU632_RS09370	0.22	-0.5
1,773,856	-		LU632_RS09370	0.22	-1.9
1,773,910	-		LU632_RS09370	0.26	-0.5
1,774,087	+		LU632_RS09370	0.40	+0.4
1,774,088	-		LU632_RS09370	0.40	+1.6
1,774,187	-		LU632_RS09370	0.48	-1.7
1,774,204	+		LU632_RS09370	0.49	-1.1
1,774,204	+		LU632_RS09370	0.49	+1.5
1,774,205	-		LU632_RS09370	0.49	-0.9
1,774,206	+		LU632_RS09370	0.49	-0.0
1,774,206	+		LU632_RS09370	0.49	+0.6
1,774,233	+		LU632_RS09370	0.51	-1.3
1,774,234	-		LU632_RS09370	0.52	-3.4
1,774,234	-		LU632_RS09370	0.52	-0.3
1,774,234	-		LU632_RS09370	0.52	+0.1
1,774,234	-		LU632_RS09370	0.52	-2.5
1,774,296	-		LU632_RS09370	0.56	+1.5
1,774,360	+		LU632_RS09370	0.61	-0.3
1,774,360	+		LU632_RS09370	0.61	+1.2
1,774,361	-		LU632_RS09370	0.62	-2.2
1,774,361	-		LU632_RS09370	0.62	-1.3
1,774,362	+		LU632_RS09370	0.62	+0.1
1,774,363	-		LU632_RS09370	0.62	-1.6
1,774,363	-		LU632_RS09370	0.62	-0.5
1,774,363	-		LU632_RS09370	0.62	-1.2
1,774,482	-		LU632_RS09370	0.71	-0.9
1,774,482	-		LU632_RS09370	0.71	-1.8
1,774,549	+		LU632_RS09370	0.76	-1.6
1,774,662	+		LU632_RS09370	0.85	-0.5
1,774,662	+		LU632_RS09370	0.85	-0.8
1,774,675	+		LU632_RS09370	0.86	+0.4
1,774,704	+		LU632_RS09370	0.88	-2.4
1,774,705	-		LU632_RS09370	0.88	+1.0
1,774,705	-		LU632_RS09370	0.88	-1.7
1,774,840	+				+1.3
1,774,840	+				-1.5
1,774,841	-				-1.2
1,774,841	-				+1.1
1,774,841	-				-1.0
1,774,844	+				+0.8
1,774,845	-				+0.6
1,774,845	-				+1.6
1,774,876	-				+0.4
1,774,982	-		LU632_RS09375	0.18	+1.1
1,774,983	+		LU632_RS09375	0.18	-0.0
1,774,983	+		LU632_RS09375	0.18	+0.7
1,774,984	-		LU632_RS09375	0.18	-1.9
1,774,984	-		LU632_RS09375	0.18	-1.7
1,775,129	+		LU632_RS09375	0.38	-0.5
1,775,242	+		LU632_RS09375	0.54	-1.1
1,775,242	+		LU632_RS09375	0.54	-0.0
1,775,242	+		LU632_RS09375	0.54	+0.7
1,775,243	-		LU632_RS09375	0.54	-0.5
1,775,243	-		LU632_RS09375	0.54	+0.9
1,775,243	-		LU632_RS09375	0.54	-2.4
1,775,243	-		LU632_RS09375	0.54	+1.7
1,775,243	-		LU632_RS09375	0.54	+1.5
1,775,328	-		LU632_RS09375	0.66	-1.9
1,775,328	-		LU632_RS09375	0.66	-1.5
1,775,472	+		LU632_RS09375	0.86	+0.2
1,775,472	+		LU632_RS09375	0.86	-0.1
1,775,473	-		LU632_RS09375	0.86	-0.6
1,775,473	-		LU632_RS09375	0.86	-0.3
1,775,473	-		LU632_RS09375	0.86	-0.6
1,775,629	+		LU632_RS09380	0.14	-1.1
1,775,629	+		LU632_RS09380	0.14	-0.9
1,775,636	+		LU632_RS09380	0.16	+0.8
1,775,651	-		LU632_RS09380	0.19	+1.1
1,775,653	+		LU632_RS09380	0.20	-1.0
1,775,654	-		LU632_RS09380	0.20	-0.1
1,775,692	-		LU632_RS09380	0.29	+0.7
1,775,692	-		LU632_RS09380	0.29	+1.3
1,775,733	+		LU632_RS09380	0.38	+2.1
1,775,766	+		LU632_RS09380	0.46	-1.0
1,775,803	-		LU632_RS09380	0.54	+3.3
1,775,838	+		LU632_RS09380	0.62	-0.1
1,775,848	+		LU632_RS09380	0.65	+0.0