Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides LU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides LU632_RS05125 and LU632_RS05130 are separated by 12 nucleotides LU632_RS05130 and LU632_RS05135 overlap by 4 nucleotides LU632_RS05135 and LU632_RS05140 overlap by 1 nucleotides
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131
_RS05125
LU632_RS05130: LU632_RS05130 - TIGR03750 family conjugal transfer protein, at 995,144 to 995,500
_RS05130
LU632_RS05135: LU632_RS05135 - TIGR03746 family integrating conjugative element protein, at 995,497 to 996,168
_RS05135
LU632_RS05140: LU632_RS05140 - TIGR03749 family integrating conjugative element protein, at 996,168 to 997,091
_RS05140
Position (kb) 995
996 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand at 994.503 kb on - strand, within LU632_RS05120 at 994.685 kb on + strand, within LU632_RS05120 at 994.716 kb on + strand at 994.716 kb on + strand at 994.717 kb on - strand at 994.750 kb on + strand at 994.751 kb on - strand at 994.769 kb on - strand at 994.978 kb on + strand, within LU632_RS05125 at 995.093 kb on - strand, within LU632_RS05125 at 995.464 kb on + strand, within LU632_RS05130 at 995.497 kb on - strand at 995.633 kb on - strand, within LU632_RS05135 at 995.636 kb on - strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.761 kb on + strand, within LU632_RS05135 at 995.914 kb on + strand, within LU632_RS05135 at 995.915 kb on - strand, within LU632_RS05135 at 995.934 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 996.183 kb on + strand at 996.183 kb on + strand at 996.183 kb on + strand at 996.184 kb on - strand at 996.402 kb on + strand, within LU632_RS05140 at 996.402 kb on + strand, within LU632_RS05140 at 996.402 kb on + strand, within LU632_RS05140
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3) remove 994,435 + LU632_RS05115 0.90 +0.7 994,435 + LU632_RS05115 0.90 +0.8 994,436 - -1.0 994,436 - -0.7 994,450 + +2.5 994,503 - LU632_RS05120 0.14 +1.7 994,685 + LU632_RS05120 0.88 +0.8 994,716 + +3.4 994,716 + +0.5 994,717 - -2.5 994,750 + +1.7 994,751 - -1.1 994,769 - +1.5 994,978 + LU632_RS05125 0.60 -2.6 995,093 - LU632_RS05125 0.90 +0.1 995,464 + LU632_RS05130 0.90 -2.7 995,497 - +0.6 995,633 - LU632_RS05135 0.20 +1.2 995,636 - LU632_RS05135 0.21 +1.1 995,698 + LU632_RS05135 0.30 -0.9 995,698 + LU632_RS05135 0.30 +0.1 995,714 - LU632_RS05135 0.32 -0.8 995,714 - LU632_RS05135 0.32 -1.3 995,761 + LU632_RS05135 0.39 +1.4 995,914 + LU632_RS05135 0.62 +2.7 995,915 - LU632_RS05135 0.62 -1.2 995,934 + LU632_RS05135 0.65 +2.8 995,986 + LU632_RS05135 0.73 +0.8 995,986 + LU632_RS05135 0.73 -0.2 995,986 + LU632_RS05135 0.73 -0.2 995,987 - LU632_RS05135 0.73 -0.4 995,987 - LU632_RS05135 0.73 +0.8 996,183 + -0.4 996,183 + +2.8 996,183 + +2.0 996,184 - +0.2 996,402 + LU632_RS05140 0.25 +1.3 996,402 + LU632_RS05140 0.25 -1.9 996,402 + LU632_RS05140 0.25 -1.8
Or see this region's nucleotide sequence