Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04065

Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04050 and LU632_RS04055 are separated by 72 nucleotidesLU632_RS04055 and tnpA are separated by 113 nucleotidestnpA and LU632_RS04065 are separated by 81 nucleotidesLU632_RS04065 and LU632_RS04070 are separated by 20 nucleotidesLU632_RS04070 and LU632_RS04075 are separated by 222 nucleotides LU632_RS04050: LU632_RS04050 - IS3 family transposase, at 808,733 to 809,896 _RS04050 LU632_RS04055: LU632_RS04055 - GntR family transcriptional regulator, at 809,969 to 810,166 _RS04055 LU632_RS04060: tnpA - IS200/IS605 family transposase, at 810,280 to 810,720 tnpA LU632_RS04065: LU632_RS04065 - AlpA family phage regulatory protein, at 810,802 to 811,080 _RS04065 LU632_RS04070: LU632_RS04070 - Rha family transcriptional regulator, at 811,101 to 811,700 _RS04070 LU632_RS04075: LU632_RS04075 - IS481 family transposase, at 811,923 to 812,962 _RS04075 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 810.025 kb on + strand, within LU632_RS04055at 810.026 kb on - strand, within LU632_RS04055at 810.035 kb on - strand, within LU632_RS04055at 810.117 kb on - strand, within LU632_RS04055at 810.813 kb on + strandat 810.822 kb on + strandat 810.859 kb on - strand, within LU632_RS04065at 810.880 kb on - strand, within LU632_RS04065at 810.981 kb on + strand, within LU632_RS04065at 811.083 kb on - strandat 811.092 kb on + strandat 811.093 kb on - strandat 811.111 kb on + strandat 811.207 kb on + strand, within LU632_RS04070at 811.208 kb on - strand, within LU632_RS04070at 811.353 kb on + strand, within LU632_RS04070at 811.353 kb on + strand, within LU632_RS04070at 811.353 kb on + strand, within LU632_RS04070at 811.353 kb on + strand, within LU632_RS04070at 811.354 kb on - strand, within LU632_RS04070at 811.354 kb on - strand, within LU632_RS04070at 811.354 kb on - strand, within LU632_RS04070at 811.354 kb on - strand, within LU632_RS04070at 811.354 kb on - strand, within LU632_RS04070at 811.355 kb on + strand, within LU632_RS04070at 811.355 kb on + strand, within LU632_RS04070at 811.357 kb on + strand, within LU632_RS04070at 811.357 kb on + strand, within LU632_RS04070at 811.357 kb on + strand, within LU632_RS04070at 811.358 kb on - strand, within LU632_RS04070at 811.435 kb on - strand, within LU632_RS04070at 811.435 kb on - strand, within LU632_RS04070at 811.440 kb on + strand, within LU632_RS04070at 811.460 kb on - strand, within LU632_RS04070at 811.460 kb on - strand, within LU632_RS04070at 811.460 kb on - strand, within LU632_RS04070at 811.460 kb on - strand, within LU632_RS04070at 811.461 kb on + strand, within LU632_RS04070at 811.461 kb on + strand, within LU632_RS04070at 811.467 kb on + strand, within LU632_RS04070at 811.467 kb on + strand, within LU632_RS04070at 811.468 kb on - strand, within LU632_RS04070at 811.468 kb on - strand, within LU632_RS04070at 811.532 kb on + strand, within LU632_RS04070at 811.636 kb on - strand, within LU632_RS04070at 811.683 kb on - strandat 811.694 kb on + strandat 811.695 kb on - strandat 811.698 kb on + strandat 811.753 kb on + strandat 811.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
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810,025 + LU632_RS04055 0.28 +0.9
810,026 - LU632_RS04055 0.29 -0.3
810,035 - LU632_RS04055 0.33 +0.2
810,117 - LU632_RS04055 0.75 -0.6
810,813 + +0.7
810,822 + -1.5
810,859 - LU632_RS04065 0.20 -2.2
810,880 - LU632_RS04065 0.28 -1.8
810,981 + LU632_RS04065 0.64 -0.6
811,083 - -0.7
811,092 + -2.1
811,093 - -0.8
811,111 + +2.3
811,207 + LU632_RS04070 0.18 -0.5
811,208 - LU632_RS04070 0.18 -0.4
811,353 + LU632_RS04070 0.42 -0.4
811,353 + LU632_RS04070 0.42 -0.7
811,353 + LU632_RS04070 0.42 +2.7
811,353 + LU632_RS04070 0.42 +0.6
811,354 - LU632_RS04070 0.42 -2.4
811,354 - LU632_RS04070 0.42 -0.4
811,354 - LU632_RS04070 0.42 +0.8
811,354 - LU632_RS04070 0.42 +0.7
811,354 - LU632_RS04070 0.42 +0.4
811,355 + LU632_RS04070 0.42 -1.1
811,355 + LU632_RS04070 0.42 -2.2
811,357 + LU632_RS04070 0.43 -2.3
811,357 + LU632_RS04070 0.43 -0.1
811,357 + LU632_RS04070 0.43 +2.8
811,358 - LU632_RS04070 0.43 -1.3
811,435 - LU632_RS04070 0.56 -2.5
811,435 - LU632_RS04070 0.56 +0.2
811,440 + LU632_RS04070 0.56 +0.5
811,460 - LU632_RS04070 0.60 -1.1
811,460 - LU632_RS04070 0.60 -0.8
811,460 - LU632_RS04070 0.60 -0.8
811,460 - LU632_RS04070 0.60 +2.1
811,461 + LU632_RS04070 0.60 -0.4
811,461 + LU632_RS04070 0.60 +4.0
811,467 + LU632_RS04070 0.61 +0.6
811,467 + LU632_RS04070 0.61 -1.3
811,468 - LU632_RS04070 0.61 -2.2
811,468 - LU632_RS04070 0.61 +2.8
811,532 + LU632_RS04070 0.72 -1.1
811,636 - LU632_RS04070 0.89 -0.4
811,683 - -1.0
811,694 + -1.0
811,695 - -2.5
811,698 + -0.7
811,753 + -2.5
811,892 + -1.5

Or see this region's nucleotide sequence