Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02440 and LU632_RS02445 overlap by 8 nucleotides LU632_RS02445 and LU632_RS02450 are separated by 56 nucleotides LU632_RS02450 and LU632_RS02455 are separated by 53 nucleotides LU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides
LU632_RS02440: LU632_RS02440 - ABC transporter ATP-binding protein, at 486,778 to 487,590
_RS02440
LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419
_RS02445
LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580
_RS02450
LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976
_RS02455
LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500
_RS02460
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.479 kb on - strand, within LU632_RS02440 at 487.514 kb on + strand at 487.515 kb on - strand at 487.515 kb on - strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.519 kb on - strand at 487.519 kb on - strand at 487.536 kb on - strand at 487.551 kb on - strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.624 kb on - strand at 487.946 kb on + strand, within LU632_RS02445 at 487.947 kb on - strand, within LU632_RS02445 at 487.999 kb on + strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.099 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.249 kb on + strand, within LU632_RS02445 at 488.250 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.337 kb on + strand at 488.337 kb on + strand at 488.338 kb on - strand at 488.359 kb on - strand at 488.361 kb on + strand at 488.378 kb on - strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.477 kb on + strand at 488.528 kb on + strand, within LU632_RS02450 at 488.550 kb on + strand, within LU632_RS02450 at 488.670 kb on + strand, within LU632_RS02455 at 488.681 kb on + strand, within LU632_RS02455 at 488.684 kb on + strand, within LU632_RS02455 at 488.833 kb on - strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.138 kb on + strand, within LU632_RS02460 at 489.247 kb on - strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.249 kb on - strand, within LU632_RS02460 at 489.285 kb on - strand, within LU632_RS02460 at 489.360 kb on + strand, within LU632_RS02460 at 489.506 kb on + strand at 489.507 kb on - strand at 489.525 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.528 kb on - strand at 489.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3) remove 487,479 - LU632_RS02440 0.86 +0.1 487,514 + -1.9 487,515 - +0.2 487,515 - -1.3 487,518 + +2.6 487,518 + +1.9 487,518 + +3.7 487,518 + -0.0 487,518 + -0.7 487,519 - +2.1 487,519 - -0.6 487,536 - +1.6 487,551 - -2.3 487,569 + -2.8 487,569 + +0.0 487,569 + -0.0 487,624 - -0.2 487,946 + LU632_RS02445 0.43 +0.8 487,947 - LU632_RS02445 0.43 -0.4 487,999 + LU632_RS02445 0.50 +1.9 488,000 - LU632_RS02445 0.50 -1.0 488,000 - LU632_RS02445 0.50 -1.0 488,077 - LU632_RS02445 0.59 -3.1 488,077 - LU632_RS02445 0.59 +1.9 488,099 - LU632_RS02445 0.62 +0.5 488,166 - LU632_RS02445 0.70 -2.1 488,166 - LU632_RS02445 0.70 +1.1 488,206 + LU632_RS02445 0.74 +0.8 488,206 + LU632_RS02445 0.74 -0.8 488,207 - LU632_RS02445 0.75 +1.5 488,207 - LU632_RS02445 0.75 -0.2 488,207 - LU632_RS02445 0.75 -0.7 488,249 + LU632_RS02445 0.80 +2.4 488,250 - LU632_RS02445 0.80 -0.6 488,277 - LU632_RS02445 0.83 -2.5 488,277 - LU632_RS02445 0.83 -0.3 488,280 + LU632_RS02445 0.83 -1.2 488,280 + LU632_RS02445 0.83 +1.9 488,315 - LU632_RS02445 0.87 +2.6 488,315 - LU632_RS02445 0.87 -0.4 488,337 + -1.7 488,337 + +0.5 488,338 - +0.2 488,359 - -0.3 488,361 + -1.7 488,378 - +1.7 488,398 + -1.2 488,398 + +1.8 488,398 + -2.2 488,477 + +0.1 488,528 + LU632_RS02450 0.50 -3.5 488,550 + LU632_RS02450 0.70 +0.6 488,670 + LU632_RS02455 0.10 +3.9 488,681 + LU632_RS02455 0.14 -3.0 488,684 + LU632_RS02455 0.15 +0.1 488,833 - LU632_RS02455 0.58 -0.8 488,872 + LU632_RS02455 0.69 -0.4 488,872 + LU632_RS02455 0.69 +0.4 488,872 + LU632_RS02455 0.69 -0.0 488,873 - LU632_RS02455 0.70 -1.0 488,873 - LU632_RS02455 0.70 -2.5 488,873 - LU632_RS02455 0.70 +0.5 488,873 - LU632_RS02455 0.70 +1.4 488,873 - LU632_RS02455 0.70 -0.0 489,055 - LU632_RS02460 0.18 +0.2 489,055 - LU632_RS02460 0.18 -0.1 489,055 - LU632_RS02460 0.18 -1.4 489,055 - LU632_RS02460 0.18 -0.4 489,138 + LU632_RS02460 0.33 -0.5 489,247 - LU632_RS02460 0.53 -0.2 489,248 + LU632_RS02460 0.53 -1.5 489,248 + LU632_RS02460 0.53 -0.7 489,249 - LU632_RS02460 0.54 -0.5 489,285 - LU632_RS02460 0.60 -2.7 489,360 + LU632_RS02460 0.74 -0.7 489,506 + -2.4 489,507 - -2.0 489,525 + +2.9 489,527 + -1.0 489,527 + -0.7 489,527 + +0.1 489,527 + +0.9 489,528 - -0.4 489,528 - -1.7
Or see this region's nucleotide sequence