Experiment: Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ugpC and LU632_RS00810 are separated by 27 nucleotides LU632_RS00810 and LU632_RS00815 overlap by 11 nucleotides LU632_RS00815 and LU632_RS00820 are separated by 9 nucleotides
LU632_RS00805: ugpC - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 175,371 to 176,495
ugpC
LU632_RS00810: LU632_RS00810 - carbohydrate ABC transporter permease, at 176,523 to 177,362
_RS00810
LU632_RS00815: LU632_RS00815 - sugar ABC transporter permease, at 177,352 to 178,260
_RS00815
LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520
_RS00820
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 176.496 kb on - strand at 176.585 kb on + strand at 176.586 kb on - strand at 176.589 kb on + strand at 176.696 kb on + strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.705 kb on + strand, within LU632_RS00810 at 176.719 kb on + strand, within LU632_RS00810 at 176.720 kb on - strand, within LU632_RS00810 at 176.867 kb on + strand, within LU632_RS00810 at 176.868 kb on - strand, within LU632_RS00810 at 176.920 kb on + strand, within LU632_RS00810 at 176.921 kb on - strand, within LU632_RS00810 at 176.946 kb on - strand, within LU632_RS00810 at 177.011 kb on + strand, within LU632_RS00810 at 177.011 kb on + strand, within LU632_RS00810 at 177.012 kb on - strand, within LU632_RS00810 at 177.012 kb on - strand, within LU632_RS00810 at 177.013 kb on + strand, within LU632_RS00810 at 177.013 kb on - strand, within LU632_RS00810 at 177.014 kb on - strand, within LU632_RS00810 at 177.014 kb on - strand, within LU632_RS00810 at 177.353 kb on + strand at 177.363 kb on - strand at 177.404 kb on + strand at 177.404 kb on + strand at 177.404 kb on + strand at 177.405 kb on - strand at 177.405 kb on - strand at 177.412 kb on + strand at 177.449 kb on + strand, within LU632_RS00815 at 177.495 kb on - strand, within LU632_RS00815 at 177.551 kb on + strand, within LU632_RS00815 at 177.551 kb on + strand, within LU632_RS00815 at 177.551 kb on + strand, within LU632_RS00815 at 177.551 kb on + strand, within LU632_RS00815 at 177.552 kb on - strand, within LU632_RS00815 at 177.552 kb on - strand, within LU632_RS00815 at 177.728 kb on - strand, within LU632_RS00815 at 177.957 kb on - strand, within LU632_RS00815 at 178.032 kb on - strand, within LU632_RS00815 at 178.080 kb on - strand, within LU632_RS00815 at 178.086 kb on - strand, within LU632_RS00815 at 178.086 kb on - strand, within LU632_RS00815 at 178.104 kb on - strand, within LU632_RS00815 at 178.122 kb on + strand, within LU632_RS00815 at 178.122 kb on + strand, within LU632_RS00815 at 178.123 kb on - strand, within LU632_RS00815 at 178.126 kb on + strand, within LU632_RS00815 at 178.127 kb on - strand, within LU632_RS00815 at 178.127 kb on - strand, within LU632_RS00815 at 178.198 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.271 kb on + strand at 178.272 kb on - strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.478 kb on + strand, within LU632_RS00820 at 178.478 kb on + strand, within LU632_RS00820 at 178.514 kb on + strand, within LU632_RS00820 at 178.515 kb on - strand, within LU632_RS00820 at 178.551 kb on + strand, within LU632_RS00820 at 178.551 kb on + strand, within LU632_RS00820 at 178.551 kb on + strand, within LU632_RS00820 at 178.552 kb on - strand, within LU632_RS00820 at 178.553 kb on + strand, within LU632_RS00820 at 178.554 kb on - strand, within LU632_RS00820 at 178.680 kb on + strand, within LU632_RS00820 at 178.709 kb on + strand, within LU632_RS00820 at 178.710 kb on - strand, within LU632_RS00820 at 178.710 kb on - strand, within LU632_RS00820 at 178.710 kb on - strand, within LU632_RS00820 at 178.713 kb on + strand, within LU632_RS00820 at 178.713 kb on + strand, within LU632_RS00820 at 178.714 kb on - strand, within LU632_RS00820 at 178.715 kb on + strand, within LU632_RS00820 at 178.715 kb on + strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.716 kb on - strand, within LU632_RS00820 at 178.781 kb on + strand, within LU632_RS00820 at 178.782 kb on - strand, within LU632_RS00820 at 178.922 kb on + strand, within LU632_RS00820 at 178.923 kb on - strand, within LU632_RS00820 at 179.075 kb on + strand, within LU632_RS00820 at 179.076 kb on - strand, within LU632_RS00820 at 179.076 kb on - strand, within LU632_RS00820 at 179.085 kb on - strand, within LU632_RS00820 at 179.089 kb on - strand, within LU632_RS00820 at 179.239 kb on - strand, within LU632_RS00820
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 3 (TE-S-M3-P3) remove 176,496 - -0.1 176,585 + -2.0 176,586 - -0.6 176,589 + +0.5 176,696 + LU632_RS00810 0.21 +1.8 176,697 - LU632_RS00810 0.21 -2.5 176,697 - LU632_RS00810 0.21 -0.0 176,697 - LU632_RS00810 0.21 +1.5 176,697 - LU632_RS00810 0.21 +2.5 176,705 + LU632_RS00810 0.22 +0.7 176,719 + LU632_RS00810 0.23 -0.7 176,720 - LU632_RS00810 0.23 -2.6 176,867 + LU632_RS00810 0.41 +0.1 176,868 - LU632_RS00810 0.41 +0.1 176,920 + LU632_RS00810 0.47 -2.0 176,921 - LU632_RS00810 0.47 -0.8 176,946 - LU632_RS00810 0.50 +0.5 177,011 + LU632_RS00810 0.58 +2.1 177,011 + LU632_RS00810 0.58 +1.3 177,012 - LU632_RS00810 0.58 -1.3 177,012 - LU632_RS00810 0.58 +0.5 177,013 + LU632_RS00810 0.58 +1.9 177,013 - LU632_RS00810 0.58 -1.5 177,014 - LU632_RS00810 0.58 -1.8 177,014 - LU632_RS00810 0.58 +0.3 177,353 + -0.3 177,363 - -1.2 177,404 + +0.7 177,404 + +0.6 177,404 + -2.3 177,405 - +0.7 177,405 - +0.5 177,412 + -0.7 177,449 + LU632_RS00815 0.11 +1.5 177,495 - LU632_RS00815 0.16 -0.2 177,551 + LU632_RS00815 0.22 +0.4 177,551 + LU632_RS00815 0.22 -2.2 177,551 + LU632_RS00815 0.22 +1.3 177,551 + LU632_RS00815 0.22 -1.5 177,552 - LU632_RS00815 0.22 -1.8 177,552 - LU632_RS00815 0.22 +0.7 177,728 - LU632_RS00815 0.41 -1.4 177,957 - LU632_RS00815 0.67 -0.6 178,032 - LU632_RS00815 0.75 +4.4 178,080 - LU632_RS00815 0.80 -0.3 178,086 - LU632_RS00815 0.81 -1.6 178,086 - LU632_RS00815 0.81 -3.2 178,104 - LU632_RS00815 0.83 -0.1 178,122 + LU632_RS00815 0.85 -1.2 178,122 + LU632_RS00815 0.85 +0.5 178,123 - LU632_RS00815 0.85 +0.4 178,126 + LU632_RS00815 0.85 -0.9 178,127 - LU632_RS00815 0.85 -0.3 178,127 - LU632_RS00815 0.85 +0.2 178,198 + -0.2 178,271 + +0.7 178,271 + +2.8 178,271 + +2.1 178,271 + +2.8 178,271 + +0.3 178,271 + -1.2 178,271 + +1.1 178,272 - +1.0 178,365 + +1.7 178,365 + +2.6 178,478 + LU632_RS00820 0.17 +0.6 178,478 + LU632_RS00820 0.17 -1.3 178,514 + LU632_RS00820 0.20 +0.5 178,515 - LU632_RS00820 0.20 -0.4 178,551 + LU632_RS00820 0.22 +2.6 178,551 + LU632_RS00820 0.22 +2.1 178,551 + LU632_RS00820 0.22 +0.8 178,552 - LU632_RS00820 0.23 -0.8 178,553 + LU632_RS00820 0.23 -0.0 178,554 - LU632_RS00820 0.23 -1.9 178,680 + LU632_RS00820 0.33 -1.0 178,709 + LU632_RS00820 0.35 +0.5 178,710 - LU632_RS00820 0.35 +0.5 178,710 - LU632_RS00820 0.35 -0.4 178,710 - LU632_RS00820 0.35 -1.0 178,713 + LU632_RS00820 0.35 -0.7 178,713 + LU632_RS00820 0.35 +0.7 178,714 - LU632_RS00820 0.35 -2.2 178,715 + LU632_RS00820 0.36 -1.1 178,715 + LU632_RS00820 0.36 -0.1 178,716 - LU632_RS00820 0.36 +4.3 178,716 - LU632_RS00820 0.36 +0.7 178,716 - LU632_RS00820 0.36 -2.1 178,716 - LU632_RS00820 0.36 +0.2 178,716 - LU632_RS00820 0.36 +0.6 178,716 - LU632_RS00820 0.36 +0.1 178,716 - LU632_RS00820 0.36 +0.5 178,781 + LU632_RS00820 0.41 +1.2 178,782 - LU632_RS00820 0.41 +1.5 178,922 + LU632_RS00820 0.52 -0.1 178,923 - LU632_RS00820 0.52 +0.1 179,075 + LU632_RS00820 0.64 +0.7 179,076 - LU632_RS00820 0.64 +0.4 179,076 - LU632_RS00820 0.64 +1.1 179,085 - LU632_RS00820 0.65 +1.1 179,089 - LU632_RS00820 0.65 -1.4 179,239 - LU632_RS00820 0.77 +0.4
Or see this region's nucleotide sequence