Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS05610 and ABI39_RS05615 are separated by 11 nucleotides ABI39_RS05615 and ABI39_RS05620 are separated by 4 nucleotides ABI39_RS05620 and ABI39_RS05625 are separated by 37 nucleotides
ABI39_RS05610: ABI39_RS05610 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,550,280 to 1,551,335
_RS05610
ABI39_RS05615: ABI39_RS05615 - tRNA pseudouridine(55) synthase TruB, at 1,551,347 to 1,552,054
_RS05615
ABI39_RS05620: ABI39_RS05620 - undecaprenyl-diphosphate phosphatase, at 1,552,059 to 1,552,859
_RS05620
ABI39_RS05625: ABI39_RS05625 - DUF3098 domain-containing protein, at 1,552,897 to 1,553,142
_RS05625
Position (kb) 1551
1552
1553 Strain fitness (log2 ratio) -1
0
1 at 1551.764 kb on - strand, within ABI39_RS05615 at 1551.771 kb on - strand, within ABI39_RS05615 at 1551.771 kb on - strand, within ABI39_RS05615 at 1551.978 kb on - strand, within ABI39_RS05615 at 1552.032 kb on - strand at 1552.061 kb on - strand at 1552.110 kb on - strand at 1552.146 kb on - strand, within ABI39_RS05620 at 1552.158 kb on - strand, within ABI39_RS05620 at 1552.158 kb on - strand, within ABI39_RS05620 at 1552.219 kb on - strand, within ABI39_RS05620 at 1552.260 kb on - strand, within ABI39_RS05620 at 1552.422 kb on - strand, within ABI39_RS05620 at 1552.509 kb on - strand, within ABI39_RS05620 at 1552.616 kb on - strand, within ABI39_RS05620 at 1552.684 kb on - strand, within ABI39_RS05620 at 1552.740 kb on - strand, within ABI39_RS05620 at 1552.753 kb on - strand, within ABI39_RS05620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,551,764 - ABI39_RS05615 0.59 +0.1 1,551,771 - ABI39_RS05615 0.60 +0.5 1,551,771 - ABI39_RS05615 0.60 +0.6 1,551,978 - ABI39_RS05615 0.89 +0.8 1,552,032 - +0.2 1,552,061 - -0.3 1,552,110 - -0.1 1,552,146 - ABI39_RS05620 0.11 +0.0 1,552,158 - ABI39_RS05620 0.12 +0.4 1,552,158 - ABI39_RS05620 0.12 +0.1 1,552,219 - ABI39_RS05620 0.20 -0.0 1,552,260 - ABI39_RS05620 0.25 +0.4 1,552,422 - ABI39_RS05620 0.45 -0.7 1,552,509 - ABI39_RS05620 0.56 +0.1 1,552,616 - ABI39_RS05620 0.70 -0.4 1,552,684 - ABI39_RS05620 0.78 -0.3 1,552,740 - ABI39_RS05620 0.85 +0.1 1,552,753 - ABI39_RS05620 0.87 -0.1
Or see this region's nucleotide sequence