Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25945

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
1,349	+		LU632_RS25935	0.20	+2.3
1,349	+		LU632_RS25935	0.20	-1.3
1,401	+		LU632_RS25935	0.26	-0.1
1,401	+		LU632_RS25935	0.26	-0.9
1,401	+		LU632_RS25935	0.26	+1.1
1,401	+		LU632_RS25935	0.26	+1.1
1,401	+		LU632_RS25935	0.26	+0.2
1,402	-		LU632_RS25935	0.26	+1.2
1,402	-		LU632_RS25935	0.26	-2.1
1,402	-		LU632_RS25935	0.26	+0.8
1,412	+		LU632_RS25935	0.27	-3.0
1,412	-		LU632_RS25935	0.27	+1.1
1,413	-		LU632_RS25935	0.27	-0.4
1,419	+		LU632_RS25935	0.28	-0.4
1,455	+		LU632_RS25935	0.32	+2.4
1,455	+		LU632_RS25935	0.32	+0.8
1,455	+		LU632_RS25935	0.32	+0.6
1,455	+		LU632_RS25935	0.32	+2.0
1,455	+		LU632_RS25935	0.32	-4.2
1,455	+		LU632_RS25935	0.32	-1.4
1,455	+		LU632_RS25935	0.32	+0.9
1,455	-		LU632_RS25935	0.32	+0.7
1,456	-		LU632_RS25935	0.32	+2.4
1,456	-		LU632_RS25935	0.32	-1.0
1,456	-		LU632_RS25935	0.32	+0.1
1,456	-		LU632_RS25935	0.32	-0.1
1,456	-		LU632_RS25935	0.32	+0.5
1,456	-		LU632_RS25935	0.32	+1.0
1,456	-		LU632_RS25935	0.32	-0.1
1,456	-		LU632_RS25935	0.32	-0.4
1,456	-		LU632_RS25935	0.32	-2.2
1,457	+		LU632_RS25935	0.32	-1.4
1,457	+		LU632_RS25935	0.32	-1.7
1,457	+		LU632_RS25935	0.32	+0.3
1,457	+		LU632_RS25935	0.32	-0.6
1,457	+		LU632_RS25935	0.32	+0.2
1,457	+		LU632_RS25935	0.32	-0.4
1,458	-		LU632_RS25935	0.33	-0.4
1,458	-		LU632_RS25935	0.33	-0.1
1,458	-		LU632_RS25935	0.33	+0.8
1,458	-		LU632_RS25935	0.33	-0.3
1,460	+		LU632_RS25935	0.33	-0.7
1,460	+		LU632_RS25935	0.33	+1.0
1,460	+		LU632_RS25935	0.33	-1.9
1,461	-		LU632_RS25935	0.33	-0.1
1,481	+		LU632_RS25935	0.35	+0.0
1,481	+		LU632_RS25935	0.35	+0.2
1,481	+		LU632_RS25935	0.35	-2.4
1,482	-		LU632_RS25935	0.35	+0.5
1,556	+		LU632_RS25935	0.44	+0.5
1,556	+		LU632_RS25935	0.44	-2.5
1,557	-		LU632_RS25935	0.44	+0.6
1,557	-		LU632_RS25935	0.44	-2.2
1,592	+		LU632_RS25935	0.48	-0.5
1,655	+		LU632_RS25935	0.55	+0.3
1,655	+		LU632_RS25935	0.55	+1.0
1,655	+		LU632_RS25935	0.55	+0.2
1,655	+		LU632_RS25935	0.55	-0.4
1,655	+		LU632_RS25935	0.55	+0.4
1,656	-		LU632_RS25935	0.55	-1.2
1,656	-		LU632_RS25935	0.55	-0.6
1,708	+		LU632_RS25935	0.61	+0.5
1,708	+		LU632_RS25935	0.61	-0.1
1,708	+		LU632_RS25935	0.61	-3.1
1,708	+		LU632_RS25935	0.61	+0.2
1,708	+		LU632_RS25935	0.61	-2.2
1,708	+		LU632_RS25935	0.61	-1.1
1,708	+		LU632_RS25935	0.61	-2.2
1,708	+		LU632_RS25935	0.61	-0.4
1,708	+		LU632_RS25935	0.61	-1.4
1,708	+		LU632_RS25935	0.61	+0.6
1,708	+		LU632_RS25935	0.61	+0.9
1,708	+		LU632_RS25935	0.61	-3.9
1,709	-		LU632_RS25935	0.61	+0.2
1,709	-		LU632_RS25935	0.61	-0.4
1,709	-		LU632_RS25935	0.61	-2.2
1,709	-		LU632_RS25935	0.61	-0.2
1,709	-		LU632_RS25935	0.61	+2.3
1,709	-		LU632_RS25935	0.61	-1.3
1,709	-		LU632_RS25935	0.61	-0.4
1,709	-		LU632_RS25935	0.61	-0.0
1,709	-		LU632_RS25935	0.61	-1.3
1,709	-		LU632_RS25935	0.61	-0.4
1,709	-		LU632_RS25935	0.61	-1.7
1,709	-		LU632_RS25935	0.61	-0.7
1,709	-		LU632_RS25935	0.61	+1.8
1,709	-		LU632_RS25935	0.61	+1.7
1,709	-		LU632_RS25935	0.61	-2.8
1,709	-		LU632_RS25935	0.61	-2.7
1,709	-		LU632_RS25935	0.61	-2.8
1,709	-		LU632_RS25935	0.61	+0.5
1,709	-		LU632_RS25935	0.61	+0.3
1,709	-		LU632_RS25935	0.61	-0.0
1,709	-		LU632_RS25935	0.61	-2.8
1,709	-		LU632_RS25935	0.61	-2.0
1,709	-		LU632_RS25935	0.61	-0.7
1,718	+		LU632_RS25935	0.62	+2.1
1,718	+		LU632_RS25935	0.62	-0.5
1,718	+		LU632_RS25935	0.62	+1.3
1,719	-		LU632_RS25935	0.62	-0.4
1,719	-		LU632_RS25935	0.62	-1.0
1,719	-		LU632_RS25935	0.62	-1.7
1,719	-		LU632_RS25935	0.62	+5.0
1,749	-		LU632_RS25935	0.66	+0.8
1,749	-		LU632_RS25935	0.66	+0.5
1,749	-		LU632_RS25935	0.66	-0.1
1,784	-		LU632_RS25935	0.70	+0.1
1,784	-		LU632_RS25935	0.70	-2.4
1,784	-		LU632_RS25935	0.70	+0.6
1,820	-		LU632_RS25935	0.74	-0.2
1,934	+		LU632_RS25935	0.87	-3.3
2,013	-				+2.2
2,013	-				-0.7
2,015	+				+1.9
2,016	-				-0.4
2,076	-				+1.5
2,076	-				+0.6
2,076	-				-0.2
2,076	-				-0.1
2,076	-				-1.2
2,137	+				-1.0
2,137	+				+0.8
2,184	+				-0.5
2,185	-				+2.9
2,185	-				+0.1
2,188	+				+0.2
2,189	-				+0.1
2,189	-				-1.5
2,189	-				+0.9
2,189	-				+0.7
2,196	+				-1.4
2,196	+				-0.1
2,196	+				-1.6
2,196	+				-1.0
2,196	+				-0.1
2,196	+				-2.5
2,196	+				-0.7
2,196	+				-0.9
2,197	-				+0.2
2,197	-				+0.3
2,197	-				-0.6
2,197	-				+0.3
2,316	-		LU632_RS25940	0.77	-3.1
2,319	+		LU632_RS25940	0.79	+0.0
2,319	+		LU632_RS25940	0.79	+0.8
2,319	+		LU632_RS25940	0.79	-0.8
2,319	+		LU632_RS25940	0.79	+0.5
2,319	+		LU632_RS25940	0.79	+0.1
2,320	-		LU632_RS25940	0.80	-0.9
2,320	-		LU632_RS25940	0.80	-0.4
2,355	+				-2.8
2,356	-				-3.6
2,364	+				+0.5
2,365	-				-0.6
2,365	-				-1.4
2,365	-				-0.0
2,365	-				+1.0
2,365	-				+0.7
2,365	-				+0.0
2,400	+				+1.3
2,401	-				-3.2
2,401	-				-1.2
2,404	+				-0.2
2,404	+				+1.2
2,404	+				-0.2
2,404	+				-0.9
2,404	+				-0.3
2,404	+				+1.1
2,405	-				-1.0
2,405	-				+0.5
2,405	-				-0.2
2,405	-				-1.0
2,405	-				+1.0
2,454	+		LU632_RS25945	0.16	-3.0
2,454	+		LU632_RS25945	0.16	+0.2
2,454	+		LU632_RS25945	0.16	-0.4
2,454	+		LU632_RS25945	0.16	+2.1
2,454	+		LU632_RS25945	0.16	+0.9
2,455	-		LU632_RS25945	0.16	+0.7
2,455	-		LU632_RS25945	0.16	-0.0
2,455	-		LU632_RS25945	0.16	+0.9
2,455	-		LU632_RS25945	0.16	+0.9
2,455	-		LU632_RS25945	0.16	-0.3
2,456	+		LU632_RS25945	0.16	+0.8
2,456	+		LU632_RS25945	0.16	-3.4
2,456	+		LU632_RS25945	0.16	+0.4
2,456	+		LU632_RS25945	0.16	+0.6
2,456	+		LU632_RS25945	0.16	+0.6
2,457	-		LU632_RS25945	0.16	+0.7
2,457	-		LU632_RS25945	0.16	-0.1
2,458	+		LU632_RS25945	0.16	-0.3
2,458	+		LU632_RS25945	0.16	-0.5
2,458	+		LU632_RS25945	0.16	-4.1
2,458	+		LU632_RS25945	0.16	+1.4
2,459	-		LU632_RS25945	0.16	-0.6
2,498	-		LU632_RS25945	0.22	+0.6
2,498	-		LU632_RS25945	0.22	+0.7
2,532	+		LU632_RS25945	0.27	+0.1
2,532	+		LU632_RS25945	0.27	+2.0
2,533	-		LU632_RS25945	0.28	+1.3
2,551	+		LU632_RS25945	0.30	+0.9
2,551	+		LU632_RS25945	0.30	-0.3
2,551	+		LU632_RS25945	0.30	-3.9
2,551	+		LU632_RS25945	0.30	+1.4
2,551	-		LU632_RS25945	0.30	-0.5
2,552	-		LU632_RS25945	0.30	+1.7
2,552	-		LU632_RS25945	0.30	+0.8
2,623	+		LU632_RS25945	0.41	+1.7
2,624	-		LU632_RS25945	0.41	+0.3
2,627	+		LU632_RS25945	0.42	-0.0
2,627	+		LU632_RS25945	0.42	-0.4
2,627	+		LU632_RS25945	0.42	+0.1
2,628	-		LU632_RS25945	0.42	+0.6
2,628	-		LU632_RS25945	0.42	-1.2
2,628	-		LU632_RS25945	0.42	-0.1
2,628	-		LU632_RS25945	0.42	+0.3
2,695	+		LU632_RS25945	0.52	-2.6
2,695	+		LU632_RS25945	0.52	+2.3
2,699	+		LU632_RS25945	0.52	+1.3
2,699	+		LU632_RS25945	0.52	-0.8
2,699	+		LU632_RS25945	0.52	+0.8
2,700	-		LU632_RS25945	0.52	-3.3
2,700	-		LU632_RS25945	0.52	-0.6
2,778	+		LU632_RS25945	0.64	-2.4
2,778	+		LU632_RS25945	0.64	-1.7
2,779	-		LU632_RS25945	0.64	-0.9
2,780	+		LU632_RS25945	0.64	-2.7
2,794	+		LU632_RS25945	0.67	-2.3
2,795	-		LU632_RS25945	0.67	+0.1
2,843	+		LU632_RS25945	0.74	-1.5
2,844	-		LU632_RS25945	0.74	+0.2
2,844	-		LU632_RS25945	0.74	+0.6
2,844	-		LU632_RS25945	0.74	+2.2
2,849	+		LU632_RS25945	0.75	-1.4
2,849	+		LU632_RS25945	0.75	-0.4
2,849	+		LU632_RS25945	0.75	+1.9
2,849	+		LU632_RS25945	0.75	+0.4
2,882	+		LU632_RS25945	0.80	+0.4
2,900	-		LU632_RS25945	0.82	+1.2
2,907	+		LU632_RS25945	0.83	-3.1
2,907	+		LU632_RS25945	0.83	+0.3
2,908	-		LU632_RS25945	0.84	+0.5
2,908	-		LU632_RS25945	0.84	+0.8
2,908	-		LU632_RS25945	0.84	-0.6
2,908	-		LU632_RS25945	0.84	-2.4
2,908	-		LU632_RS25945	0.84	+0.2
2,908	-		LU632_RS25945	0.84	-0.6
2,937	-		LU632_RS25945	0.88	-1.4
2,939	+		LU632_RS25945	0.88	-0.4
2,939	+		LU632_RS25945	0.88	+1.4
2,939	+		LU632_RS25945	0.88	+0.6
2,940	-		LU632_RS25945	0.88	+0.9
2,940	-		LU632_RS25945	0.88	-0.4
2,967	-				-0.7
3,004	+				+2.7
3,011	+				-1.7
3,022	-				+3.3
3,022	-				+0.3
3,053	+		LU632_RS25950	0.17	-2.4
3,127	-		LU632_RS25950	0.54	+0.1
3,186	+		LU632_RS25950	0.84	+0.5
3,186	+		LU632_RS25950	0.84	+0.1
3,187	-		LU632_RS25950	0.84	-0.9
3,218	+				-0.1
3,218	+				+0.6
3,218	+				-0.9
3,218	+				-1.4
3,218	+				+1.8
3,218	+				+0.4
3,219	-				+1.8
3,219	-				+0.8
3,219	-				-1.7
3,219	-				-1.0
3,219	-				-1.5
3,270	+				-4.4
3,383	+		LU632_RS25955	0.14	-0.1
3,383	+		LU632_RS25955	0.14	-2.0
3,383	+		LU632_RS25955	0.14	+0.5
3,384	-		LU632_RS25955	0.14	+0.1
3,398	+		LU632_RS25955	0.15	-0.1
3,398	+		LU632_RS25955	0.15	+1.2
3,399	-		LU632_RS25955	0.15	-2.4
3,399	-		LU632_RS25955	0.15	+1.0
3,399	-		LU632_RS25955	0.15	+1.5
3,399	-		LU632_RS25955	0.15	+2.5
3,399	-		LU632_RS25955	0.15	+1.0
3,399	-		LU632_RS25955	0.15	-0.6
3,400	+		LU632_RS25955	0.15	+1.3
3,400	+		LU632_RS25955	0.15	-1.4
3,400	+		LU632_RS25955	0.15	+0.2
3,401	-		LU632_RS25955	0.16	+0.1
3,401	-		LU632_RS25955	0.16	-0.7
3,401	-		LU632_RS25955	0.16	-0.0
3,401	-		LU632_RS25955	0.16	-1.0
3,431	+		LU632_RS25955	0.18	-3.3
3,431	+		LU632_RS25955	0.18	+0.1
3,431	+		LU632_RS25955	0.18	+0.6
3,431	+		LU632_RS25955	0.18	+1.8
3,431	+		LU632_RS25955	0.18	-0.4
3,431	+		LU632_RS25955	0.18	-0.1
3,431	+		LU632_RS25955	0.18	-1.0
3,431	+		LU632_RS25955	0.18	-0.4
3,431	+		LU632_RS25955	0.18	+2.9
3,431	+		LU632_RS25955	0.18	+0.7
3,431	+		LU632_RS25955	0.18	-1.2
3,432	-		LU632_RS25955	0.18	-1.8
3,432	-		LU632_RS25955	0.18	+0.9
3,432	-		LU632_RS25955	0.18	-0.1
3,432	-		LU632_RS25955	0.18	-0.5
3,477	-		LU632_RS25955	0.22	-3.7
3,553	+		LU632_RS25955	0.28	+0.7
3,553	+		LU632_RS25955	0.28	+0.4
3,553	+		LU632_RS25955	0.28	-0.1
3,553	+		LU632_RS25955	0.28	+0.6
3,560	+		LU632_RS25955	0.29	+0.3
3,560	+		LU632_RS25955	0.29	+1.4
3,564	+		LU632_RS25955	0.29	+0.3
3,564	+		LU632_RS25955	0.29	-1.0
3,564	+		LU632_RS25955	0.29	-2.5
3,564	+		LU632_RS25955	0.29	+0.3
3,564	+		LU632_RS25955	0.29	+0.8
3,564	+		LU632_RS25955	0.29	+3.0
3,565	-		LU632_RS25955	0.29	-1.3
3,565	-		LU632_RS25955	0.29	-1.7
3,593	+		LU632_RS25955	0.32	-2.4
3,594	-		LU632_RS25955	0.32	-3.6
3,675	+		LU632_RS25955	0.39	+1.3
3,676	-		LU632_RS25955	0.39	+0.9
3,676	-		LU632_RS25955	0.39	-1.6
3,676	-		LU632_RS25955	0.39	-0.6
3,676	-		LU632_RS25955	0.39	+0.1
3,682	-		LU632_RS25955	0.39	+0.1
3,784	+		LU632_RS25955	0.48	+0.1
3,785	-		LU632_RS25955	0.48	-0.7
3,914	-		LU632_RS25955	0.59	+0.6
3,914	-		LU632_RS25955	0.59	+2.9
4,003	+		LU632_RS25955	0.66	-0.1