Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24710

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
4,706,704	+		LU632_RS24705	0.45	-1.7
4,706,704	+		LU632_RS24705	0.45	-1.6
4,706,705	-		LU632_RS24705	0.45	+0.2
4,706,705	-		LU632_RS24705	0.45	-0.1
4,706,705	-		LU632_RS24705	0.45	-0.7
4,706,705	-		LU632_RS24705	0.45	-0.0
4,706,705	-		LU632_RS24705	0.45	-0.9
4,706,735	-		LU632_RS24705	0.48	+0.6
4,706,737	-		LU632_RS24705	0.48	+1.4
4,706,799	+		LU632_RS24705	0.53	-1.1
4,706,800	-		LU632_RS24705	0.53	-1.4
4,706,863	-		LU632_RS24705	0.58	+0.2
4,706,867	+		LU632_RS24705	0.58	-0.4
4,706,904	+		LU632_RS24705	0.61	-3.5
4,706,904	+		LU632_RS24705	0.61	+0.1
4,706,905	-		LU632_RS24705	0.61	+0.4
4,706,918	+		LU632_RS24705	0.62	-0.7
4,706,919	-		LU632_RS24705	0.62	+0.2
4,706,943	+		LU632_RS24705	0.64	-2.8
4,707,014	+		LU632_RS24705	0.70	-0.5
4,707,051	+		LU632_RS24705	0.73	+0.7
4,707,052	-		LU632_RS24705	0.73	+1.6
4,707,072	+		LU632_RS24705	0.74	+0.9
4,707,073	-		LU632_RS24705	0.74	-0.7
4,707,085	+		LU632_RS24705	0.75	-0.4
4,707,086	-		LU632_RS24705	0.75	-0.7
4,707,185	-		LU632_RS24705	0.83	+0.4
4,707,190	-		LU632_RS24705	0.84	+0.5
4,707,267	+		LU632_RS24705	0.90	-0.2
4,707,277	-				-2.5
4,707,470	+				-1.4
4,707,651	+		LU632_RS24710	0.11	+0.8
4,707,651	+		LU632_RS24710	0.11	-0.3
4,707,688	+		LU632_RS24710	0.12	+2.2
4,707,694	-		LU632_RS24710	0.12	-2.0
4,707,805	+		LU632_RS24710	0.17	+0.4
4,707,806	+		LU632_RS24710	0.17	-0.8
4,707,807	-		LU632_RS24710	0.17	+3.7
4,707,957	+		LU632_RS24710	0.23	-2.6
4,707,963	+		LU632_RS24710	0.24	+0.5
4,707,963	+		LU632_RS24710	0.24	+1.2
4,708,007	+		LU632_RS24710	0.26	-2.0
4,708,008	-		LU632_RS24710	0.26	+0.0
4,708,018	-		LU632_RS24710	0.26	-0.6
4,708,021	+		LU632_RS24710	0.26	-0.0
4,708,022	-		LU632_RS24710	0.26	+1.6
4,708,037	+		LU632_RS24710	0.27	+1.9
4,708,038	-		LU632_RS24710	0.27	+0.7
4,708,040	-		LU632_RS24710	0.27	-1.9
4,708,040	-		LU632_RS24710	0.27	+0.6
4,708,091	-		LU632_RS24710	0.29	-0.1
4,708,147	+		LU632_RS24710	0.31	-0.6
4,708,147	+		LU632_RS24710	0.31	-1.3
4,708,199	+		LU632_RS24710	0.34	-0.4
4,708,385	+		LU632_RS24710	0.41	+1.1
4,708,385	+		LU632_RS24710	0.41	+0.9
4,708,387	+		LU632_RS24710	0.41	+0.2
4,708,387	+		LU632_RS24710	0.41	+0.0
4,708,387	+		LU632_RS24710	0.41	+0.3
4,708,387	+		LU632_RS24710	0.41	+1.6
4,708,387	+		LU632_RS24710	0.41	-0.7
4,708,388	-		LU632_RS24710	0.41	+0.6
4,708,388	-		LU632_RS24710	0.41	-0.4
4,708,487	-		LU632_RS24710	0.46	+1.0
4,708,487	-		LU632_RS24710	0.46	-0.3
4,708,487	-		LU632_RS24710	0.46	+0.1
4,708,490	+		LU632_RS24710	0.46	+0.4
4,708,490	+		LU632_RS24710	0.46	+0.6
4,708,490	+		LU632_RS24710	0.46	+0.9
4,708,544	+		LU632_RS24710	0.48	-0.6
4,708,552	+		LU632_RS24710	0.48	-0.3
4,708,582	+		LU632_RS24710	0.50	-0.7
4,708,601	+		LU632_RS24710	0.50	+0.8
4,708,602	-		LU632_RS24710	0.50	-0.1
4,708,602	-		LU632_RS24710	0.50	+0.1
4,708,602	-		LU632_RS24710	0.50	+1.9
4,708,602	-		LU632_RS24710	0.50	+0.5
4,708,602	-		LU632_RS24710	0.50	+0.3
4,708,602	-		LU632_RS24710	0.50	+0.0
4,708,602	-		LU632_RS24710	0.50	+0.1
4,708,603	+		LU632_RS24710	0.50	+2.2
4,708,604	-		LU632_RS24710	0.51	+0.8
4,708,638	-		LU632_RS24710	0.52	+0.7
4,708,644	-		LU632_RS24710	0.52	-2.9
4,708,793	-		LU632_RS24710	0.58	-0.3
4,708,793	-		LU632_RS24710	0.58	+0.8
4,708,856	-		LU632_RS24710	0.61	+0.2
4,708,875	-		LU632_RS24710	0.62	+0.7
4,708,919	-		LU632_RS24710	0.64	-1.3
4,708,969	-		LU632_RS24710	0.66	-0.2
4,708,969	-		LU632_RS24710	0.66	-0.4
4,709,038	+		LU632_RS24710	0.69	+3.6
4,709,038	+		LU632_RS24710	0.69	+0.1
4,709,076	-		LU632_RS24710	0.70	+0.3
4,709,120	-		LU632_RS24710	0.72	+1.0
4,709,323	-		LU632_RS24710	0.81	-0.4
4,709,323	-		LU632_RS24710	0.81	-2.0
4,709,371	+		LU632_RS24710	0.83	-0.5
4,709,372	-		LU632_RS24710	0.83	-0.2
4,709,372	-		LU632_RS24710	0.83	+0.8
4,709,376	-		LU632_RS24710	0.83	-0.3
4,709,376	-		LU632_RS24710	0.83	-0.9
4,709,412	-		LU632_RS24710	0.84	+0.2
4,709,413	+		LU632_RS24710	0.84	-0.4
4,709,413	+		LU632_RS24710	0.84	+0.3
4,709,413	+		LU632_RS24710	0.84	+0.8
4,709,413	+		LU632_RS24710	0.84	-0.7
4,709,414	-		LU632_RS24710	0.84	+0.4
4,709,414	-		LU632_RS24710	0.84	+0.1
4,709,414	-		LU632_RS24710	0.84	+1.2
4,709,414	-		LU632_RS24710	0.84	-0.8
4,709,414	-		LU632_RS24710	0.84	+0.1
4,709,471	+		LU632_RS24710	0.87	+1.6
4,709,519	+		LU632_RS24710	0.89	+0.1
4,709,550	+				-0.3
4,709,550	+				-1.9
4,709,550	+				+0.3
4,709,717	+				+0.7
4,709,739	+				-1.6
4,709,740	-				+0.4
4,709,740	-				+0.8
4,709,740	-				+0.9
4,709,740	-				+0.4
4,709,740	-				+0.7
4,709,740	-				-1.2
4,709,796	+				+1.1
4,709,802	+				-1.3
4,709,803	-				+0.2
4,709,880	+				+0.7
4,709,901	-				+1.0
4,710,023	+		LU632_RS24715	0.26	+0.3
4,710,044	-		LU632_RS24715	0.30	-0.4
4,710,097	+		LU632_RS24715	0.40	+2.2
4,710,101	+		LU632_RS24715	0.40	+1.3
4,710,102	-		LU632_RS24715	0.41	+1.6
4,710,102	-		LU632_RS24715	0.41	-1.8
4,710,125	-		LU632_RS24715	0.45	+1.2
4,710,220	-		LU632_RS24715	0.63	+1.0
4,710,310	+		LU632_RS24715	0.80	+1.0
4,710,311	-		LU632_RS24715	0.80	+0.1
4,710,311	-		LU632_RS24715	0.80	-1.2
4,710,312	+		LU632_RS24715	0.80	+0.5
4,710,313	-		LU632_RS24715	0.80	-0.3
4,710,417	+				+0.5
4,710,452	+				+1.1
4,710,473	-				-0.7
4,710,510	-				-0.3
4,710,618	-		LU632_RS24720	0.17	-1.8
4,710,777	-		LU632_RS24720	0.37	-0.2