Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kefB and kefG are separated by 0 nucleotides kefG and LU632_RS22745 are separated by 228 nucleotides LU632_RS22745 and tauD are separated by 241 nucleotides
LU632_RS22735: kefB - glutathione-regulated potassium-efflux system protein KefB, at 4,326,965 to 4,328,770
kefB
LU632_RS22740: kefG - glutathione-regulated potassium-efflux system ancillary protein KefG, at 4,328,771 to 4,329,322
kefG
LU632_RS22745: LU632_RS22745 - ABC transporter ATP-binding protein, at 4,329,551 to 4,331,458
_RS22745
LU632_RS22750: tauD - taurine dioxygenase, at 4,331,700 to 4,332,539
tauD
Position (kb) 4329
4330
4331
4332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4328.623 kb on + strand at 4328.717 kb on + strand at 4328.717 kb on + strand at 4328.718 kb on - strand at 4328.718 kb on - strand at 4328.865 kb on + strand, within kefG at 4328.865 kb on + strand, within kefG at 4328.866 kb on - strand, within kefG at 4328.869 kb on + strand, within kefG at 4328.930 kb on - strand, within kefG at 4328.930 kb on - strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.946 kb on + strand, within kefG at 4328.946 kb on + strand, within kefG at 4328.947 kb on - strand, within kefG at 4329.103 kb on + strand, within kefG at 4329.103 kb on + strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.106 kb on - strand, within kefG at 4329.106 kb on - strand, within kefG at 4329.109 kb on + strand, within kefG at 4329.109 kb on + strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.111 kb on + strand, within kefG at 4329.150 kb on - strand, within kefG at 4329.172 kb on + strand, within kefG at 4329.291 kb on + strand at 4329.291 kb on + strand at 4329.291 kb on + strand at 4329.292 kb on - strand at 4329.292 kb on - strand at 4329.402 kb on - strand at 4329.405 kb on + strand at 4329.406 kb on - strand at 4329.425 kb on + strand at 4329.425 kb on + strand at 4329.426 kb on - strand at 4329.426 kb on - strand at 4329.427 kb on + strand at 4329.437 kb on - strand at 4329.470 kb on + strand at 4329.478 kb on + strand at 4329.509 kb on + strand at 4329.509 kb on + strand at 4329.530 kb on - strand at 4329.538 kb on + strand at 4329.538 kb on + strand at 4329.542 kb on - strand at 4329.550 kb on + strand at 4329.576 kb on + strand at 4329.576 kb on + strand at 4329.577 kb on - strand at 4329.577 kb on - strand at 4329.622 kb on + strand at 4329.691 kb on + strand at 4329.692 kb on - strand at 4329.702 kb on + strand at 4329.722 kb on - strand at 4329.722 kb on - strand at 4329.723 kb on - strand at 4329.797 kb on + strand, within LU632_RS22745 at 4329.797 kb on + strand, within LU632_RS22745 at 4329.798 kb on - strand, within LU632_RS22745 at 4329.861 kb on + strand, within LU632_RS22745 at 4329.862 kb on - strand, within LU632_RS22745 at 4329.924 kb on + strand, within LU632_RS22745 at 4329.925 kb on - strand, within LU632_RS22745 at 4329.925 kb on - strand, within LU632_RS22745 at 4329.978 kb on + strand, within LU632_RS22745 at 4329.978 kb on + strand, within LU632_RS22745 at 4330.230 kb on - strand, within LU632_RS22745 at 4330.230 kb on - strand, within LU632_RS22745 at 4330.241 kb on + strand, within LU632_RS22745 at 4330.242 kb on - strand, within LU632_RS22745 at 4330.435 kb on + strand, within LU632_RS22745 at 4330.435 kb on + strand, within LU632_RS22745 at 4330.445 kb on - strand, within LU632_RS22745 at 4330.600 kb on + strand, within LU632_RS22745 at 4330.655 kb on - strand, within LU632_RS22745 at 4330.787 kb on + strand, within LU632_RS22745 at 4330.938 kb on + strand, within LU632_RS22745 at 4330.943 kb on - strand, within LU632_RS22745 at 4331.116 kb on - strand, within LU632_RS22745 at 4331.318 kb on - strand at 4331.321 kb on + strand at 4331.322 kb on - strand at 4331.430 kb on + strand at 4331.430 kb on + strand at 4331.466 kb on + strand at 4331.467 kb on - strand at 4331.467 kb on - strand at 4331.470 kb on - strand at 4331.537 kb on - strand at 4331.723 kb on + strand at 4331.723 kb on + strand at 4331.723 kb on + strand at 4331.724 kb on - strand at 4331.724 kb on - strand at 4331.724 kb on - strand at 4331.759 kb on - strand at 4331.833 kb on - strand, within tauD at 4331.852 kb on + strand, within tauD at 4331.852 kb on + strand, within tauD at 4331.933 kb on + strand, within tauD at 4331.969 kb on + strand, within tauD at 4331.973 kb on + strand, within tauD at 4331.974 kb on - strand, within tauD at 4331.974 kb on - strand, within tauD at 4331.974 kb on - strand, within tauD at 4332.054 kb on - strand, within tauD at 4332.054 kb on - strand, within tauD at 4332.136 kb on + strand, within tauD at 4332.136 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.221 kb on + strand, within tauD at 4332.235 kb on - strand, within tauD at 4332.322 kb on + strand, within tauD at 4332.433 kb on + strand, within tauD at 4332.433 kb on + strand, within tauD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 4,328,623 + +1.6 4,328,717 + +1.6 4,328,717 + -1.8 4,328,718 - +0.4 4,328,718 - -0.5 4,328,865 + kefG LU632_RS22740 0.17 -0.4 4,328,865 + kefG LU632_RS22740 0.17 -1.4 4,328,866 - kefG LU632_RS22740 0.17 +0.1 4,328,869 + kefG LU632_RS22740 0.18 +0.7 4,328,930 - kefG LU632_RS22740 0.29 -0.1 4,328,930 - kefG LU632_RS22740 0.29 +0.5 4,328,944 + kefG LU632_RS22740 0.31 +0.5 4,328,944 + kefG LU632_RS22740 0.31 +0.8 4,328,944 + kefG LU632_RS22740 0.31 -0.1 4,328,944 + kefG LU632_RS22740 0.31 +0.8 4,328,944 + kefG LU632_RS22740 0.31 +0.5 4,328,944 + kefG LU632_RS22740 0.31 -1.2 4,328,944 + kefG LU632_RS22740 0.31 -0.8 4,328,944 + kefG LU632_RS22740 0.31 -0.9 4,328,945 - kefG LU632_RS22740 0.32 +0.4 4,328,945 - kefG LU632_RS22740 0.32 +0.9 4,328,945 - kefG LU632_RS22740 0.32 +0.2 4,328,945 - kefG LU632_RS22740 0.32 +1.3 4,328,945 - kefG LU632_RS22740 0.32 +0.3 4,328,945 - kefG LU632_RS22740 0.32 +0.7 4,328,945 - kefG LU632_RS22740 0.32 -1.1 4,328,946 + kefG LU632_RS22740 0.32 -0.2 4,328,946 + kefG LU632_RS22740 0.32 +0.6 4,328,947 - kefG LU632_RS22740 0.32 +0.8 4,329,103 + kefG LU632_RS22740 0.60 +0.1 4,329,103 + kefG LU632_RS22740 0.60 +1.3 4,329,104 - kefG LU632_RS22740 0.60 -0.2 4,329,104 - kefG LU632_RS22740 0.60 -1.6 4,329,104 - kefG LU632_RS22740 0.60 +0.4 4,329,104 - kefG LU632_RS22740 0.60 +0.5 4,329,104 - kefG LU632_RS22740 0.60 -0.2 4,329,105 + kefG LU632_RS22740 0.61 +0.9 4,329,105 + kefG LU632_RS22740 0.61 -0.9 4,329,105 + kefG LU632_RS22740 0.61 +0.6 4,329,106 - kefG LU632_RS22740 0.61 -1.2 4,329,106 - kefG LU632_RS22740 0.61 +0.3 4,329,109 + kefG LU632_RS22740 0.61 +0.4 4,329,109 + kefG LU632_RS22740 0.61 +1.3 4,329,110 - kefG LU632_RS22740 0.61 +0.5 4,329,110 - kefG LU632_RS22740 0.61 -0.7 4,329,110 - kefG LU632_RS22740 0.61 +0.0 4,329,111 + kefG LU632_RS22740 0.62 -0.7 4,329,150 - kefG LU632_RS22740 0.69 +0.8 4,329,172 + kefG LU632_RS22740 0.73 -0.4 4,329,291 + +1.5 4,329,291 + +0.5 4,329,291 + +0.3 4,329,292 - +1.0 4,329,292 - +0.5 4,329,402 - +0.9 4,329,405 + +0.6 4,329,406 - -0.8 4,329,425 + +1.4 4,329,425 + -0.5 4,329,426 - -0.3 4,329,426 - -0.7 4,329,427 + -1.1 4,329,437 - +1.6 4,329,470 + +1.5 4,329,478 + -0.8 4,329,509 + -0.3 4,329,509 + +0.2 4,329,530 - -1.7 4,329,538 + -1.7 4,329,538 + +0.2 4,329,542 - -0.7 4,329,550 + +1.6 4,329,576 + +1.0 4,329,576 + +0.4 4,329,577 - -1.3 4,329,577 - -3.8 4,329,622 + -0.3 4,329,691 + -1.7 4,329,692 - +3.0 4,329,702 + -0.4 4,329,722 - -1.7 4,329,722 - +1.8 4,329,723 - +0.4 4,329,797 + LU632_RS22745 0.13 -0.1 4,329,797 + LU632_RS22745 0.13 +1.2 4,329,798 - LU632_RS22745 0.13 -1.4 4,329,861 + LU632_RS22745 0.16 -1.4 4,329,862 - LU632_RS22745 0.16 +0.6 4,329,924 + LU632_RS22745 0.20 -0.4 4,329,925 - LU632_RS22745 0.20 -2.0 4,329,925 - LU632_RS22745 0.20 -0.5 4,329,978 + LU632_RS22745 0.22 -0.4 4,329,978 + LU632_RS22745 0.22 -0.3 4,330,230 - LU632_RS22745 0.36 -2.3 4,330,230 - LU632_RS22745 0.36 -0.9 4,330,241 + LU632_RS22745 0.36 +0.1 4,330,242 - LU632_RS22745 0.36 -0.4 4,330,435 + LU632_RS22745 0.46 +0.6 4,330,435 + LU632_RS22745 0.46 -1.4 4,330,445 - LU632_RS22745 0.47 -1.8 4,330,600 + LU632_RS22745 0.55 +0.3 4,330,655 - LU632_RS22745 0.58 -1.4 4,330,787 + LU632_RS22745 0.65 +0.9 4,330,938 + LU632_RS22745 0.73 -1.3 4,330,943 - LU632_RS22745 0.73 +0.8 4,331,116 - LU632_RS22745 0.82 -0.7 4,331,318 - -0.0 4,331,321 + +0.4 4,331,322 - +0.1 4,331,430 + -0.5 4,331,430 + +1.1 4,331,466 + +0.1 4,331,467 - -0.5 4,331,467 - +0.8 4,331,470 - +0.8 4,331,537 - -0.8 4,331,723 + +1.5 4,331,723 + +1.2 4,331,723 + +0.2 4,331,724 - +0.2 4,331,724 - -0.1 4,331,724 - +2.1 4,331,759 - -0.3 4,331,833 - tauD LU632_RS22750 0.16 +0.1 4,331,852 + tauD LU632_RS22750 0.18 +0.1 4,331,852 + tauD LU632_RS22750 0.18 +3.4 4,331,933 + tauD LU632_RS22750 0.28 +0.6 4,331,969 + tauD LU632_RS22750 0.32 -0.4 4,331,973 + tauD LU632_RS22750 0.33 +0.6 4,331,974 - tauD LU632_RS22750 0.33 +1.9 4,331,974 - tauD LU632_RS22750 0.33 -0.9 4,331,974 - tauD LU632_RS22750 0.33 -1.2 4,332,054 - tauD LU632_RS22750 0.42 -1.4 4,332,054 - tauD LU632_RS22750 0.42 -1.7 4,332,136 + tauD LU632_RS22750 0.52 -0.2 4,332,136 + tauD LU632_RS22750 0.52 -0.1 4,332,164 + tauD LU632_RS22750 0.55 -0.4 4,332,164 + tauD LU632_RS22750 0.55 +0.0 4,332,164 + tauD LU632_RS22750 0.55 -0.4 4,332,165 - tauD LU632_RS22750 0.55 +0.3 4,332,165 - tauD LU632_RS22750 0.55 -1.8 4,332,165 - tauD LU632_RS22750 0.55 -1.1 4,332,221 + tauD LU632_RS22750 0.62 +0.2 4,332,235 - tauD LU632_RS22750 0.64 +0.5 4,332,322 + tauD LU632_RS22750 0.74 +1.6 4,332,433 + tauD LU632_RS22750 0.87 -0.8 4,332,433 + tauD LU632_RS22750 0.87 -2.3
Or see this region's nucleotide sequence