Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptA and lptB are separated by 10 nucleotides lptB and rpoN are separated by 46 nucleotides rpoN and hpf are separated by 22 nucleotides hpf and ptsN are separated by 197 nucleotides
LU632_RS21270: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,060,818 to 4,061,366
lptA
LU632_RS21275: lptB - LPS export ABC transporter ATP-binding protein, at 4,061,377 to 4,062,102
lptB
LU632_RS21280: rpoN - RNA polymerase factor sigma-54, at 4,062,149 to 4,063,582
rpoN
LU632_RS21285: hpf - ribosome hibernation promoting factor, at 4,063,605 to 4,063,892
hpf
LU632_RS21290: ptsN - PTS IIA-like nitrogen regulatory protein PtsN, at 4,064,090 to 4,064,575
ptsN
Position (kb) 4062
4063
4064 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4061.364 kb on + strand at 4063.530 kb on - strand at 4063.592 kb on + strand at 4063.605 kb on - strand at 4063.616 kb on + strand at 4063.663 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.716 kb on + strand, within hpf at 4063.717 kb on - strand, within hpf at 4063.815 kb on + strand, within hpf at 4063.815 kb on + strand, within hpf at 4063.815 kb on + strand, within hpf at 4063.815 kb on + strand, within hpf at 4063.816 kb on - strand, within hpf at 4063.816 kb on - strand, within hpf at 4063.816 kb on - strand, within hpf at 4063.869 kb on - strand at 4063.890 kb on + strand at 4063.933 kb on + strand at 4063.933 kb on + strand at 4063.949 kb on + strand at 4064.033 kb on + strand at 4064.452 kb on - strand, within ptsN at 4064.452 kb on - strand, within ptsN
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 4,061,364 + -0.2 4,063,530 - -4.2 4,063,592 + +0.1 4,063,605 - -1.9 4,063,616 + -0.9 4,063,663 + hpf LU632_RS21285 0.20 -0.1 4,063,716 + hpf LU632_RS21285 0.39 +0.4 4,063,716 + hpf LU632_RS21285 0.39 -0.2 4,063,716 + hpf LU632_RS21285 0.39 -0.4 4,063,716 + hpf LU632_RS21285 0.39 -0.5 4,063,716 + hpf LU632_RS21285 0.39 -1.0 4,063,716 + hpf LU632_RS21285 0.39 -2.0 4,063,717 - hpf LU632_RS21285 0.39 -1.0 4,063,815 + hpf LU632_RS21285 0.73 +1.0 4,063,815 + hpf LU632_RS21285 0.73 +0.3 4,063,815 + hpf LU632_RS21285 0.73 -0.7 4,063,815 + hpf LU632_RS21285 0.73 -1.6 4,063,816 - hpf LU632_RS21285 0.73 +0.1 4,063,816 - hpf LU632_RS21285 0.73 -0.2 4,063,816 - hpf LU632_RS21285 0.73 -1.8 4,063,869 - -2.0 4,063,890 + -0.2 4,063,933 + +0.7 4,063,933 + -1.5 4,063,949 + +0.4 4,064,033 + +0.6 4,064,452 - ptsN LU632_RS21290 0.74 -0.8 4,064,452 - ptsN LU632_RS21290 0.74 -0.0
Or see this region's nucleotide sequence