Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20975

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
4,007,941	+		LU632_RS20970	0.73	+0.1
4,007,952	+		LU632_RS20970	0.73	+0.6
4,007,952	+		LU632_RS20970	0.73	+1.5
4,007,953	-		LU632_RS20970	0.73	-1.4
4,007,958	+		LU632_RS20970	0.73	+1.3
4,008,056	+		LU632_RS20970	0.77	+0.6
4,008,056	+		LU632_RS20970	0.77	-0.5
4,008,056	+		LU632_RS20970	0.77	+1.0
4,008,056	+		LU632_RS20970	0.77	+0.5
4,008,057	-		LU632_RS20970	0.77	+0.5
4,008,057	-		LU632_RS20970	0.77	+0.9
4,008,060	+		LU632_RS20970	0.77	+0.2
4,008,060	+		LU632_RS20970	0.77	+0.7
4,008,060	+		LU632_RS20970	0.77	+0.4
4,008,061	-		LU632_RS20970	0.77	+2.5
4,008,061	-		LU632_RS20970	0.77	+0.3
4,008,097	+		LU632_RS20970	0.79	+3.6
4,008,098	-		LU632_RS20970	0.79	+2.4
4,008,212	+		LU632_RS20970	0.83	+1.1
4,008,212	+		LU632_RS20970	0.83	-0.5
4,008,260	+		LU632_RS20970	0.85	+0.7
4,008,304	+		LU632_RS20970	0.87	-1.2
4,008,306	+		LU632_RS20970	0.87	-0.5
4,008,307	-		LU632_RS20970	0.87	+0.5
4,008,331	+		LU632_RS20970	0.88	+0.3
4,008,331	+		LU632_RS20970	0.88	+0.9
4,008,331	+		LU632_RS20970	0.88	+0.3
4,008,479	-				+0.4
4,008,515	-				+1.0
4,008,535	-				+0.3
4,008,557	-				+2.2
4,008,629	+				+0.6
4,008,630	-				+0.8
4,008,633	+				+1.2
4,008,633	+				+0.0
4,008,706	+				+0.1
4,008,706	+				-0.5
4,008,849	-				-0.5
4,008,851	-				+0.4
4,008,854	+				-0.0
4,008,855	-				-1.6
4,008,886	-				-0.0
4,008,900	+				+1.1
4,008,900	+				-0.3
4,008,915	+				-1.0
4,008,918	+				+1.5
4,008,937	+				-2.3
4,008,957	+				-0.1
4,009,001	-				+3.1
4,009,001	-				-0.1
4,009,001	-				-0.6
4,009,010	-				+0.1
4,009,145	+	nrdD	LU632_RS20975	0.11	-2.4
4,009,146	-	nrdD	LU632_RS20975	0.11	-0.3
4,009,146	-	nrdD	LU632_RS20975	0.11	+2.7
4,009,146	-	nrdD	LU632_RS20975	0.11	-0.0
4,009,210	-	nrdD	LU632_RS20975	0.14	+0.4
4,009,322	+	nrdD	LU632_RS20975	0.19	+0.9
4,009,338	+	nrdD	LU632_RS20975	0.20	-0.8
4,009,338	+	nrdD	LU632_RS20975	0.20	+0.5
4,009,338	+	nrdD	LU632_RS20975	0.20	+2.5
4,009,338	+	nrdD	LU632_RS20975	0.20	+0.3
4,009,339	-	nrdD	LU632_RS20975	0.20	-0.1
4,009,401	-	nrdD	LU632_RS20975	0.23	-1.6
4,009,401	-	nrdD	LU632_RS20975	0.23	-1.2
4,009,558	+	nrdD	LU632_RS20975	0.31	+0.0
4,009,596	+	nrdD	LU632_RS20975	0.32	+1.2
4,009,596	+	nrdD	LU632_RS20975	0.32	-0.5
4,009,597	-	nrdD	LU632_RS20975	0.32	+0.9
4,009,597	-	nrdD	LU632_RS20975	0.32	-0.7
4,009,597	-	nrdD	LU632_RS20975	0.32	-0.1
4,009,597	-	nrdD	LU632_RS20975	0.32	-0.1
4,009,597	-	nrdD	LU632_RS20975	0.32	+1.7
4,009,597	-	nrdD	LU632_RS20975	0.32	+0.3
4,009,676	+	nrdD	LU632_RS20975	0.36	-1.0
4,009,882	-	nrdD	LU632_RS20975	0.46	+0.4
4,009,900	+	nrdD	LU632_RS20975	0.47	-1.6
4,009,900	+	nrdD	LU632_RS20975	0.47	-0.4
4,009,900	+	nrdD	LU632_RS20975	0.47	+0.1
4,009,901	-	nrdD	LU632_RS20975	0.47	-1.8
4,010,006	+	nrdD	LU632_RS20975	0.51	+0.1
4,010,113	+	nrdD	LU632_RS20975	0.56	-0.6
4,010,117	-	nrdD	LU632_RS20975	0.57	+2.0
4,010,132	-	nrdD	LU632_RS20975	0.57	-0.1
4,010,276	-	nrdD	LU632_RS20975	0.64	-0.7
4,010,282	+	nrdD	LU632_RS20975	0.64	+1.2
4,010,285	-	nrdD	LU632_RS20975	0.65	-1.9
4,010,395	+	nrdD	LU632_RS20975	0.70	-1.0
4,010,426	+	nrdD	LU632_RS20975	0.71	+0.7
4,010,475	+	nrdD	LU632_RS20975	0.73	-0.1
4,010,550	+	nrdD	LU632_RS20975	0.77	-1.0
4,010,590	+	nrdD	LU632_RS20975	0.79	-1.8
4,010,593	+	nrdD	LU632_RS20975	0.79	+0.0
4,010,593	+	nrdD	LU632_RS20975	0.79	-0.3
4,010,593	+	nrdD	LU632_RS20975	0.79	+0.4
4,010,618	+	nrdD	LU632_RS20975	0.80	+0.3
4,010,618	+	nrdD	LU632_RS20975	0.80	+0.1
4,010,783	+	nrdD	LU632_RS20975	0.88	-2.4
4,010,783	+	nrdD	LU632_RS20975	0.88	-0.3
4,010,784	-	nrdD	LU632_RS20975	0.88	-0.7
4,010,784	-	nrdD	LU632_RS20975	0.88	+0.2
4,010,785	+	nrdD	LU632_RS20975	0.88	-0.7
4,010,785	+	nrdD	LU632_RS20975	0.88	+1.6
4,010,785	+	nrdD	LU632_RS20975	0.88	-1.9
4,010,789	+	nrdD	LU632_RS20975	0.88	+0.7
4,010,790	-	nrdD	LU632_RS20975	0.88	+0.1
4,010,807	+	nrdD	LU632_RS20975	0.89	-0.1
4,010,808	-	nrdD	LU632_RS20975	0.89	+0.2
4,011,001	-				-2.4
4,011,019	+				+0.1
4,011,019	+				-0.8
4,011,020	-				-2.0
4,011,020	-				-0.4
4,011,020	-				+0.8
4,011,020	-				-0.1
4,011,020	-				-0.2
4,011,036	+				+0.6
4,011,048	-				+0.6
4,011,055	+				+0.1
4,011,056	-				-1.2
4,011,139	+	nrdG	LU632_RS20980	0.21	+0.9
4,011,140	-	nrdG	LU632_RS20980	0.22	-1.2
4,011,181	-	nrdG	LU632_RS20980	0.30	-0.4
4,011,339	+	nrdG	LU632_RS20980	0.64	+0.9
4,011,340	-	nrdG	LU632_RS20980	0.65	-0.6
4,011,490	+				-0.4
4,011,497	+				+0.2
4,011,497	+				-0.4
4,011,497	+				+1.0
4,011,511	+				-0.0
4,011,511	+				-0.8
4,011,511	+				+0.8
4,011,511	+				+0.3
4,011,512	-				+2.6
4,011,551	+				-0.0
4,011,552	-				-0.8
4,011,582	+		LU632_RS20985	0.17	+0.3
4,011,630	+		LU632_RS20985	0.28	+0.7
4,011,643	+		LU632_RS20985	0.31	-0.3
4,011,643	+		LU632_RS20985	0.31	-3.5
4,011,691	+		LU632_RS20985	0.42	-0.6
4,011,692	-		LU632_RS20985	0.42	+0.6
4,011,696	+		LU632_RS20985	0.43	+0.7
4,011,763	+		LU632_RS20985	0.59	+0.6
4,011,764	-		LU632_RS20985	0.59	-0.0
4,011,774	-		LU632_RS20985	0.62	-0.8
4,011,911	+				+1.1
4,011,984	+				-0.4
4,011,984	+				+1.2