Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20965

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
4,003,403	-	pyrI	LU632_RS20955	0.37	+1.3
4,003,458	+	pyrI	LU632_RS20955	0.49	+1.0
4,003,459	-	pyrI	LU632_RS20955	0.49	+0.5
4,003,459	-	pyrI	LU632_RS20955	0.49	-1.3
4,003,525	+	pyrI	LU632_RS20955	0.63	+0.2
4,003,643	+	pyrI	LU632_RS20955	0.89	+1.5
4,003,647	+	pyrI	LU632_RS20955	0.90	-0.4
4,003,692	+				-0.8
4,003,711	+				-0.3
4,003,712	-				-2.5
4,003,712	-				-0.2
4,003,714	-				-3.2
4,003,714	-				+0.3
4,003,723	+				+0.5
4,003,723	+				-0.0
4,003,814	+				+0.8
4,003,814	+				+0.5
4,003,814	+				-0.8
4,003,814	+				-0.5
4,003,815	-				-1.5
4,004,067	-	ridA	LU632_RS20960	0.65	-0.6
4,004,085	+	ridA	LU632_RS20960	0.70	-2.4
4,004,144	-	ridA	LU632_RS20960	0.85	-0.9
4,004,156	+	ridA	LU632_RS20960	0.88	-1.3
4,004,239	+				+1.2
4,004,334	+				-0.8
4,004,523	+				-1.7
4,004,549	+				-0.0
4,004,550	-				-0.2
4,004,568	+				-0.6
4,004,595	+		LU632_RS20965	0.11	-0.1
4,004,610	+		LU632_RS20965	0.12	-0.5
4,004,610	+		LU632_RS20965	0.12	+0.4
4,004,610	+		LU632_RS20965	0.12	-0.2
4,004,778	+		LU632_RS20965	0.22	-1.0
4,004,779	-		LU632_RS20965	0.22	-0.0
4,004,781	+		LU632_RS20965	0.23	-0.4
4,004,781	+		LU632_RS20965	0.23	-1.3
4,004,781	+		LU632_RS20965	0.23	-0.5
4,004,782	-		LU632_RS20965	0.23	-0.1
4,004,782	-		LU632_RS20965	0.23	-0.9
4,004,782	-		LU632_RS20965	0.23	-0.5
4,004,782	-		LU632_RS20965	0.23	-0.3
4,004,782	-		LU632_RS20965	0.23	-1.8
4,004,782	-		LU632_RS20965	0.23	+0.2
4,004,782	-		LU632_RS20965	0.23	-0.5
4,004,783	+		LU632_RS20965	0.23	-1.5
4,004,816	+		LU632_RS20965	0.25	-0.8
4,004,817	-		LU632_RS20965	0.25	-1.9
4,004,819	+		LU632_RS20965	0.25	+0.2
4,004,877	+		LU632_RS20965	0.28	-0.6
4,004,878	-		LU632_RS20965	0.28	+0.4
4,004,878	-		LU632_RS20965	0.28	+0.3
4,004,880	+		LU632_RS20965	0.28	+0.7
4,004,880	+		LU632_RS20965	0.28	-0.2
4,004,881	-		LU632_RS20965	0.28	-0.4
4,004,881	-		LU632_RS20965	0.28	+0.0
4,004,881	-		LU632_RS20965	0.28	+0.2
4,004,881	-		LU632_RS20965	0.28	-2.0
4,004,881	-		LU632_RS20965	0.28	+1.3
4,004,881	-		LU632_RS20965	0.28	-0.8
4,004,881	-		LU632_RS20965	0.28	+0.2
4,004,881	-		LU632_RS20965	0.28	-0.6
4,004,881	-		LU632_RS20965	0.28	+1.2
4,004,881	-		LU632_RS20965	0.28	+0.1
4,004,881	-		LU632_RS20965	0.28	+0.0
4,004,882	+		LU632_RS20965	0.29	-0.2
4,004,882	+		LU632_RS20965	0.29	-0.2
4,004,883	-		LU632_RS20965	0.29	+0.5
4,004,883	-		LU632_RS20965	0.29	+0.5
4,004,883	-		LU632_RS20965	0.29	+0.2
4,005,070	-		LU632_RS20965	0.40	-0.8
4,005,096	+		LU632_RS20965	0.41	+0.2
4,005,096	+		LU632_RS20965	0.41	+0.3
4,005,097	-		LU632_RS20965	0.41	-2.0
4,005,097	-		LU632_RS20965	0.41	+0.8
4,005,097	-		LU632_RS20965	0.41	+0.4
4,005,097	-		LU632_RS20965	0.41	+0.0
4,005,097	-		LU632_RS20965	0.41	+1.1
4,005,098	+		LU632_RS20965	0.41	-1.3
4,005,098	+		LU632_RS20965	0.41	+0.9
4,005,098	+		LU632_RS20965	0.41	+0.5
4,005,099	-		LU632_RS20965	0.41	+1.5
4,005,369	-		LU632_RS20965	0.57	-1.0
4,005,418	-		LU632_RS20965	0.60	+1.0
4,005,479	+		LU632_RS20965	0.64	-1.0
4,005,560	+		LU632_RS20965	0.69	-1.3
4,005,560	+		LU632_RS20965	0.69	+0.1
4,005,560	+		LU632_RS20965	0.69	+0.4
4,005,560	+		LU632_RS20965	0.69	+0.0
4,005,560	+		LU632_RS20965	0.69	-0.2
4,005,560	+		LU632_RS20965	0.69	-0.0
4,005,560	+		LU632_RS20965	0.69	+0.7
4,005,560	+		LU632_RS20965	0.69	+1.2
4,005,560	+		LU632_RS20965	0.69	-0.5
4,005,561	-		LU632_RS20965	0.69	+0.6
4,005,561	-		LU632_RS20965	0.69	-0.9
4,005,564	+		LU632_RS20965	0.69	+0.5
4,005,604	+		LU632_RS20965	0.71	-0.5
4,005,604	+		LU632_RS20965	0.71	+0.7
4,005,707	+		LU632_RS20965	0.78	-0.2
4,005,707	+		LU632_RS20965	0.78	-0.3
4,005,771	+		LU632_RS20965	0.81	-3.2
4,005,771	+		LU632_RS20965	0.81	-0.4
4,005,772	-		LU632_RS20965	0.81	+1.5
4,005,772	-		LU632_RS20965	0.81	-0.1
4,005,772	-		LU632_RS20965	0.81	-0.6
4,005,772	-		LU632_RS20965	0.81	-0.1
4,005,777	+		LU632_RS20965	0.82	-0.1
4,005,870	+		LU632_RS20965	0.87	-0.8
4,005,870	+		LU632_RS20965	0.87	+0.6
4,005,871	-		LU632_RS20965	0.87	+0.4
4,005,883	-		LU632_RS20965	0.88	+0.1
4,005,951	+				+0.5
4,005,952	-				+0.2
4,005,980	+				+0.4
4,005,981	-				-1.8
4,006,016	+				+0.8
4,006,016	+				+0.3
4,006,084	+				+1.9
4,006,195	+				+0.7
4,006,195	+				-0.0
4,006,195	+				+2.8
4,006,195	+				+0.5
4,006,195	+				+0.0
4,006,195	+				+1.0
4,006,195	+				+1.0
4,006,195	+				+1.2
4,006,195	+				+0.2
4,006,196	-				-1.0
4,006,196	-				+0.6
4,006,197	+				+0.7
4,006,336	+		LU632_RS20970	0.10	+1.3
4,006,336	+		LU632_RS20970	0.10	-1.6
4,006,372	+		LU632_RS20970	0.12	+0.3
4,006,426	-		LU632_RS20970	0.14	+0.3
4,006,465	+		LU632_RS20970	0.15	+1.2
4,006,466	-		LU632_RS20970	0.15	+0.1
4,006,920	+		LU632_RS20970	0.33	-1.3
4,007,082	-		LU632_RS20970	0.39	+1.7