Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20675

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
3,939,117	+	hldE	LU632_RS20670	0.50	-1.3
3,939,225	-	hldE	LU632_RS20670	0.57	-2.9
3,939,709	-				+0.5
3,939,882	-				+1.5
3,939,934	+				-1.6
3,939,935	-				+0.9
3,940,075	+				+0.4
3,940,076	-				+0.6
3,940,076	-				+0.8
3,940,153	-				+0.2
3,940,205	-				+0.1
3,940,205	-				-1.3
3,940,215	-				+0.1
3,940,233	+	glnE	LU632_RS20675	0.10	-0.2
3,940,234	-	glnE	LU632_RS20675	0.10	-0.7
3,940,476	-	glnE	LU632_RS20675	0.19	-0.2
3,940,476	-	glnE	LU632_RS20675	0.19	+0.5
3,940,578	+	glnE	LU632_RS20675	0.22	-0.2
3,940,675	+	glnE	LU632_RS20675	0.26	-3.6
3,940,790	+	glnE	LU632_RS20675	0.30	-0.1
3,940,935	+	glnE	LU632_RS20675	0.35	+0.8
3,940,994	+	glnE	LU632_RS20675	0.37	-2.3
3,940,995	-	glnE	LU632_RS20675	0.37	-2.5
3,940,995	-	glnE	LU632_RS20675	0.37	+0.3
3,941,016	-	glnE	LU632_RS20675	0.38	-2.6
3,941,016	-	glnE	LU632_RS20675	0.38	-1.6
3,941,074	+	glnE	LU632_RS20675	0.40	-1.5
3,941,175	-	glnE	LU632_RS20675	0.43	-0.4
3,941,182	-	glnE	LU632_RS20675	0.44	+0.2
3,941,182	-	glnE	LU632_RS20675	0.44	-1.9
3,941,229	+	glnE	LU632_RS20675	0.45	-0.5
3,941,320	-	glnE	LU632_RS20675	0.48	+1.7
3,941,523	+	glnE	LU632_RS20675	0.55	+0.4
3,941,523	+	glnE	LU632_RS20675	0.55	+0.0
3,941,523	+	glnE	LU632_RS20675	0.55	-0.6
3,941,523	+	glnE	LU632_RS20675	0.55	-0.0
3,941,523	+	glnE	LU632_RS20675	0.55	-0.9
3,941,523	+	glnE	LU632_RS20675	0.55	-0.1
3,941,524	-	glnE	LU632_RS20675	0.56	+3.1
3,941,524	-	glnE	LU632_RS20675	0.56	-3.1
3,941,524	-	glnE	LU632_RS20675	0.56	-1.9
3,941,524	-	glnE	LU632_RS20675	0.56	+0.1
3,941,850	+	glnE	LU632_RS20675	0.67	-0.5
3,941,850	+	glnE	LU632_RS20675	0.67	-0.1
3,941,853	+	glnE	LU632_RS20675	0.67	+0.0
3,941,904	+	glnE	LU632_RS20675	0.69	-0.6
3,941,905	-	glnE	LU632_RS20675	0.69	-0.1
3,941,905	-	glnE	LU632_RS20675	0.69	-0.1
3,941,937	-	glnE	LU632_RS20675	0.70	-0.3
3,941,937	-	glnE	LU632_RS20675	0.70	+0.8
3,942,062	+	glnE	LU632_RS20675	0.74	+0.2
3,942,062	+	glnE	LU632_RS20675	0.74	-1.3
3,942,062	+	glnE	LU632_RS20675	0.74	-1.8
3,942,063	-	glnE	LU632_RS20675	0.74	-1.2
3,942,063	-	glnE	LU632_RS20675	0.74	+0.3
3,942,126	+	glnE	LU632_RS20675	0.77	-2.2
3,942,127	-	glnE	LU632_RS20675	0.77	-0.1
3,942,175	-	glnE	LU632_RS20675	0.78	+0.2
3,942,538	-				+1.1
3,942,591	-				-0.9
3,942,706	-				-1.1
3,942,706	-				-0.4
3,942,792	+				+0.4
3,942,792	+				-1.3
3,942,792	+				-0.4
3,942,792	+				-0.2
3,942,792	+				+0.9
3,942,793	-				-0.6
3,942,793	-				+0.3
3,942,954	-				-0.1
3,942,954	-				-1.6
3,942,985	+		LU632_RS20680	0.11	+0.3
3,942,985	+		LU632_RS20680	0.11	+0.0
3,943,112	+		LU632_RS20680	0.21	-1.9
3,943,170	-		LU632_RS20680	0.25	-0.1
3,943,299	+		LU632_RS20680	0.35	+1.2
3,943,300	-		LU632_RS20680	0.35	+0.3
3,943,365	+		LU632_RS20680	0.40	-1.6
3,943,365	+		LU632_RS20680	0.40	+0.0
3,943,436	-		LU632_RS20680	0.45	-0.2
3,943,475	+		LU632_RS20680	0.48	-0.9
3,943,475	+		LU632_RS20680	0.48	-2.6
3,943,476	-		LU632_RS20680	0.49	+0.3
3,943,476	-		LU632_RS20680	0.49	-0.7
3,943,497	+		LU632_RS20680	0.50	+2.1
3,943,680	-		LU632_RS20680	0.64	+0.9
3,943,742	+		LU632_RS20680	0.69	-0.0
3,943,750	+		LU632_RS20680	0.70	-0.7
3,943,754	+		LU632_RS20680	0.70	+0.2