Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19125

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
3,607,030	+		LU632_RS19115	0.30	+0.4
3,607,031	-		LU632_RS19115	0.30	+3.2
3,607,064	+		LU632_RS19115	0.39	-0.1
3,607,064	+		LU632_RS19115	0.39	-1.7
3,607,065	-		LU632_RS19115	0.39	-1.5
3,607,065	-		LU632_RS19115	0.39	-1.2
3,607,065	-		LU632_RS19115	0.39	+0.2
3,607,066	+		LU632_RS19115	0.40	-0.1
3,607,066	+		LU632_RS19115	0.40	+0.0
3,607,066	+		LU632_RS19115	0.40	-1.1
3,607,067	-		LU632_RS19115	0.40	-1.1
3,607,068	+		LU632_RS19115	0.40	-2.0
3,607,069	-		LU632_RS19115	0.40	-0.4
3,607,069	-		LU632_RS19115	0.40	-0.0
3,607,118	-		LU632_RS19115	0.53	+0.2
3,607,118	-		LU632_RS19115	0.53	-0.2
3,607,118	-		LU632_RS19115	0.53	-0.3
3,607,130	+		LU632_RS19115	0.57	-2.1
3,607,131	-		LU632_RS19115	0.57	-0.3
3,607,141	-		LU632_RS19115	0.60	-0.3
3,607,147	-		LU632_RS19115	0.61	-0.4
3,607,372	+				-0.5
3,607,440	+				-0.4
3,607,572	-		LU632_RS19120	0.31	-1.7
3,607,575	-		LU632_RS19120	0.32	+0.9
3,607,659	+		LU632_RS19120	0.69	+0.3
3,607,659	+		LU632_RS19120	0.69	+0.3
3,607,659	+		LU632_RS19120	0.69	-0.8
3,607,660	-		LU632_RS19120	0.70	-0.1
3,607,695	-		LU632_RS19120	0.85	-2.8
3,607,695	-		LU632_RS19120	0.85	-0.2
3,607,710	+				-0.6
3,607,858	-				+4.3
3,607,912	+				+0.6
3,614,118	-		LU632_RS19125	0.84	+0.6
3,614,118	-		LU632_RS19125	0.84	+0.3
3,614,118	-		LU632_RS19125	0.84	+0.0
3,614,170	+		LU632_RS19125	0.84	+0.6
3,615,365	+				+0.3
3,615,365	+				-0.8
3,615,920	-				-0.2
3,615,949	+		LU632_RS19130	0.11	-0.0
3,615,976	+		LU632_RS19130	0.13	+0.1
3,616,006	+		LU632_RS19130	0.16	+0.1
3,616,006	+		LU632_RS19130	0.16	+2.2
3,616,038	+		LU632_RS19130	0.19	-1.1
3,616,081	-		LU632_RS19130	0.22	+0.7
3,616,081	-		LU632_RS19130	0.22	+2.2
3,616,087	-		LU632_RS19130	0.23	+0.6
3,616,087	-		LU632_RS19130	0.23	+0.3