Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16315

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
3,085,676	-				+0.2
3,085,678	+				+1.3
3,085,735	+		LU632_RS16310	0.13	+0.6
3,085,736	-		LU632_RS16310	0.13	-0.4
3,085,759	+		LU632_RS16310	0.15	+1.4
3,085,793	+		LU632_RS16310	0.19	-0.1
3,085,831	+		LU632_RS16310	0.22	+0.4
3,085,921	-		LU632_RS16310	0.31	+0.9
3,085,924	+		LU632_RS16310	0.31	-0.1
3,085,976	+		LU632_RS16310	0.36	-0.3
3,085,977	-		LU632_RS16310	0.36	-0.5
3,085,977	-		LU632_RS16310	0.36	+0.4
3,085,977	-		LU632_RS16310	0.36	-1.8
3,085,977	-		LU632_RS16310	0.36	-1.2
3,085,977	-		LU632_RS16310	0.36	-1.6
3,085,987	+		LU632_RS16310	0.37	+0.2
3,086,100	+		LU632_RS16310	0.47	-0.1
3,086,101	-		LU632_RS16310	0.48	+0.1
3,086,193	-		LU632_RS16310	0.56	-0.5
3,086,193	-		LU632_RS16310	0.56	+1.2
3,086,276	+		LU632_RS16310	0.64	+2.4
3,086,276	+		LU632_RS16310	0.64	+1.2
3,086,277	-		LU632_RS16310	0.64	+0.3
3,086,279	-		LU632_RS16310	0.64	+0.7
3,086,279	-		LU632_RS16310	0.64	+1.3
3,086,628	+				-0.6
3,086,638	+				+0.7
3,087,183	+				+0.2
3,087,187	+				-0.0
3,087,187	+				-2.2
3,087,329	+	corC	LU632_RS16320	0.13	-2.2
3,087,335	+	corC	LU632_RS16320	0.13	+0.3
3,087,561	+	corC	LU632_RS16320	0.39	+1.2
3,087,581	+	corC	LU632_RS16320	0.41	-0.1
3,087,581	+	corC	LU632_RS16320	0.41	-0.1
3,087,615	+	corC	LU632_RS16320	0.45	-1.3
3,087,615	+	corC	LU632_RS16320	0.45	+0.6
3,087,708	+	corC	LU632_RS16320	0.56	-1.0
3,087,722	+	corC	LU632_RS16320	0.57	+0.4
3,087,802	+	corC	LU632_RS16320	0.67	+0.8
3,087,850	+	corC	LU632_RS16320	0.72	-1.7
3,087,852	+	corC	LU632_RS16320	0.72	-1.1
3,087,930	+	corC	LU632_RS16320	0.81	+0.4
3,087,930	+	corC	LU632_RS16320	0.81	-0.2
3,087,930	+	corC	LU632_RS16320	0.81	+1.3
3,088,035	+				-0.1
3,088,038	+				-0.6
3,088,038	+				+0.9
3,088,040	+				+1.9