Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16065

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydB and cydA overlap by 4 nucleotidescydA and LU632_RS16070 are separated by 524 nucleotides LU632_RS16060: cydB - cytochrome d ubiquinol oxidase subunit II, at 3,033,384 to 3,034,523 cydB LU632_RS16065: cydA - cytochrome ubiquinol oxidase subunit I, at 3,034,520 to 3,036,106 cydA LU632_RS16070: LU632_RS16070 - IS1 family transposase, at 3,036,631 to 3,037,134 _RS16070 LU632_RS16075: LU632_RS16075 - IS1-like element transposase, at 3,037,053 to 3,037,328 _RS16075 Position (kb) 3034 3035 3036 3037Strain fitness (log2 ratio) -1 0 1at 3036.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
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3,036,218 - +1.3

Or see this region's nucleotide sequence