Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13585

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
2,593,929	+				+0.7
2,593,929	+				+0.1
2,593,929	+				-1.3
2,593,930	-				+0.7
2,593,945	+				-1.8
2,594,021	+	flhD	LU632_RS13580	0.26	+0.3
2,594,022	-	flhD	LU632_RS13580	0.27	-0.0
2,594,022	-	flhD	LU632_RS13580	0.27	+0.2
2,594,185	+	flhD	LU632_RS13580	0.73	+0.3
2,594,186	-	flhD	LU632_RS13580	0.73	+0.4
2,594,207	-	flhD	LU632_RS13580	0.79	+0.4
2,594,207	-	flhD	LU632_RS13580	0.79	+0.0
2,594,207	-	flhD	LU632_RS13580	0.79	+0.2
2,594,233	-	flhD	LU632_RS13580	0.86	-0.1
2,594,233	-	flhD	LU632_RS13580	0.86	-0.3
2,594,243	-	flhD	LU632_RS13580	0.89	-0.2
2,594,250	+				-1.1
2,594,251	-				-0.2
2,594,251	-				+0.4
2,594,251	-				-0.2
2,594,254	+				+0.2
2,594,261	+				+0.9
2,594,261	+				+0.8
2,594,261	+				+0.1
2,594,262	-				+0.4
2,594,262	-				+0.4
2,594,294	+				+0.2
2,594,294	+				+0.3
2,594,295	-				+0.5
2,594,295	-				-0.1
2,594,295	-				-0.2
2,594,348	+				-0.3
2,594,348	+				+0.3
2,594,348	+				+0.0
2,594,348	+				+0.4
2,594,349	-				+0.3
2,594,349	-				-0.4
2,594,380	-				+0.3
2,594,428	+				+0.1
2,594,437	+				-0.2
2,594,437	+				+1.2
2,594,443	+				+0.2
2,594,443	+				+1.0
2,594,444	-				+0.5
2,594,461	+				+0.6
2,594,461	+				+0.2
2,594,462	-				+0.0
2,594,522	-				-0.0
2,594,549	+				-1.3
2,594,549	+				+0.3
2,594,549	+				-0.6
2,594,550	-				+0.2
2,594,550	-				+0.3
2,594,598	-				+0.6
2,595,186	+				+0.3
2,595,270	-				-1.2
2,595,324	+				-2.0
2,595,325	-				-1.6
2,595,327	-				+2.4
2,595,336	+				-0.2
2,595,337	-				+1.0
2,595,337	-				+1.4
2,595,337	-				-0.4
2,595,495	+	otsA	LU632_RS13590	0.20	-3.0
2,595,495	+	otsA	LU632_RS13590	0.20	-0.6
2,595,496	-	otsA	LU632_RS13590	0.20	-0.8
2,595,498	-	otsA	LU632_RS13590	0.21	+0.8
2,595,498	-	otsA	LU632_RS13590	0.21	-1.0
2,595,609	-	otsA	LU632_RS13590	0.29	+2.4
2,595,635	+	otsA	LU632_RS13590	0.30	-0.8
2,595,639	+	otsA	LU632_RS13590	0.31	-1.1
2,595,646	+	otsA	LU632_RS13590	0.31	+2.3
2,595,780	-	otsA	LU632_RS13590	0.41	-1.1
2,595,807	+	otsA	LU632_RS13590	0.43	+0.6
2,595,808	-	otsA	LU632_RS13590	0.43	-0.5
2,595,813	-	otsA	LU632_RS13590	0.43	+1.2