Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13030

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnpA and LU632_RS13025 are separated by 85 nucleotidesLU632_RS13025 and LU632_RS13030 are separated by 100 nucleotidesLU632_RS13030 and LU632_RS13035 are separated by 1 nucleotides LU632_RS13020: tnpA - IS200/IS605 family transposase, at 2,484,898 to 2,485,302 tnpA LU632_RS13025: LU632_RS13025 - transposase, at 2,485,388 to 2,485,681 _RS13025 LU632_RS13030: LU632_RS13030 - helix-turn-helix domain-containing protein, at 2,485,782 to 2,486,195 _RS13030 LU632_RS13035: LU632_RS13035 - transposase, at 2,486,197 to 2,486,754 _RS13035 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -2 -1 0 1at 2485.375 kb on - strandat 2486.192 kb on + strandat 2486.831 kb on - strandat 2486.981 kb on + strandat 2487.058 kb on + strandat 2487.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
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2,485,375 - -2.6
2,486,192 + -0.4
2,486,831 - -0.9
2,486,981 + -0.0
2,487,058 + +1.0
2,487,119 - +0.1

Or see this region's nucleotide sequence