Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12760

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
2,426,983	+		LU632_RS12755	0.39	+0.2
2,426,984	-		LU632_RS12755	0.39	-2.9
2,427,073	+		LU632_RS12755	0.45	-0.7
2,427,100	-		LU632_RS12755	0.47	-0.5
2,427,121	+		LU632_RS12755	0.48	+1.2
2,427,121	+		LU632_RS12755	0.48	-0.3
2,427,240	+		LU632_RS12755	0.56	-2.0
2,427,240	+		LU632_RS12755	0.56	-1.7
2,427,240	+		LU632_RS12755	0.56	-0.8
2,427,240	+		LU632_RS12755	0.56	-0.7
2,427,240	+		LU632_RS12755	0.56	-0.2
2,427,241	-		LU632_RS12755	0.56	+0.8
2,427,243	-		LU632_RS12755	0.56	-0.1
2,427,243	-		LU632_RS12755	0.56	-0.4
2,427,454	+		LU632_RS12755	0.70	+0.7
2,427,454	+		LU632_RS12755	0.70	+0.6
2,427,455	-		LU632_RS12755	0.70	-0.1
2,427,514	-		LU632_RS12755	0.73	-0.2
2,427,632	+		LU632_RS12755	0.81	+1.2
2,427,633	-		LU632_RS12755	0.81	-2.7
2,427,656	+		LU632_RS12755	0.82	-2.4
2,427,657	-		LU632_RS12755	0.83	-1.1
2,427,657	-		LU632_RS12755	0.83	-1.6
2,427,729	+		LU632_RS12755	0.87	-1.4
2,427,755	+		LU632_RS12755	0.89	-1.3
2,427,780	+				+0.2
2,427,796	+				+0.6
2,427,797	-				-0.4
2,427,866	+				-0.4
2,427,955	+				+0.6
2,427,991	-				+0.9
2,427,991	-				-0.5
2,428,019	+				+1.5
2,428,027	+				-1.4
2,428,027	+				-0.8
2,428,084	-				-1.4
2,428,208	+	trpD	LU632_RS12760	0.18	-0.1
2,428,208	+	trpD	LU632_RS12760	0.18	+0.5
2,428,218	-	trpD	LU632_RS12760	0.18	+1.0
2,428,278	+	trpD	LU632_RS12760	0.22	+0.1
2,428,278	+	trpD	LU632_RS12760	0.22	-0.0
2,428,278	+	trpD	LU632_RS12760	0.22	-0.9
2,428,278	+	trpD	LU632_RS12760	0.22	-3.2
2,428,278	+	trpD	LU632_RS12760	0.22	-1.2
2,428,279	-	trpD	LU632_RS12760	0.22	-0.0
2,428,279	-	trpD	LU632_RS12760	0.22	-1.2
2,428,279	-	trpD	LU632_RS12760	0.22	-2.8
2,428,279	-	trpD	LU632_RS12760	0.22	+1.4
2,428,279	-	trpD	LU632_RS12760	0.22	-0.4
2,428,283	-	trpD	LU632_RS12760	0.22	-1.0
2,428,283	-	trpD	LU632_RS12760	0.22	-0.8
2,428,283	-	trpD	LU632_RS12760	0.22	-0.7
2,428,348	-	trpD	LU632_RS12760	0.26	+0.8
2,428,508	+	trpD	LU632_RS12760	0.36	+0.0
2,428,529	-	trpD	LU632_RS12760	0.38	-0.5
2,428,564	-	trpD	LU632_RS12760	0.40	-0.4
2,428,599	+	trpD	LU632_RS12760	0.42	-0.7
2,428,600	-	trpD	LU632_RS12760	0.42	+0.1
2,428,783	+	trpD	LU632_RS12760	0.54	-2.3
2,428,783	+	trpD	LU632_RS12760	0.54	+1.5
2,428,784	-	trpD	LU632_RS12760	0.54	+0.5
2,428,784	-	trpD	LU632_RS12760	0.54	+0.3
2,428,786	+	trpD	LU632_RS12760	0.54	+1.5
2,428,786	+	trpD	LU632_RS12760	0.54	-1.6
2,428,786	+	trpD	LU632_RS12760	0.54	-1.0
2,428,786	+	trpD	LU632_RS12760	0.54	+0.6
2,428,789	+	trpD	LU632_RS12760	0.54	-2.8
2,428,954	+	trpD	LU632_RS12760	0.64	-0.8
2,428,955	-	trpD	LU632_RS12760	0.64	-2.7
2,428,955	-	trpD	LU632_RS12760	0.64	+0.3
2,429,036	-	trpD	LU632_RS12760	0.69	-2.7
2,429,102	+	trpD	LU632_RS12760	0.74	-2.0
2,429,349	+	trpD	LU632_RS12760	0.89	+0.2
2,429,349	+	trpD	LU632_RS12760	0.89	-3.0
2,429,349	+	trpD	LU632_RS12760	0.89	-1.7
2,429,349	+	trpD	LU632_RS12760	0.89	-1.4
2,429,350	-	trpD	LU632_RS12760	0.89	+2.2
2,429,537	+				-1.3
2,429,537	+				-1.7
2,429,560	-				+0.3
2,429,619	+				+0.7
2,429,620	-				+0.1
2,429,620	-				+0.1
2,429,644	+				-0.8
2,429,673	-	trpCF	LU632_RS12765	0.11	-2.2
2,429,676	+	trpCF	LU632_RS12765	0.11	-0.3
2,429,677	-	trpCF	LU632_RS12765	0.11	-0.0
2,429,800	+	trpCF	LU632_RS12765	0.20	-0.2
2,429,801	-	trpCF	LU632_RS12765	0.20	+0.3
2,429,911	+	trpCF	LU632_RS12765	0.28	-0.6
2,429,912	-	trpCF	LU632_RS12765	0.28	-0.5
2,429,933	+	trpCF	LU632_RS12765	0.30	+0.4
2,429,962	+	trpCF	LU632_RS12765	0.32	-0.6
2,429,988	+	trpCF	LU632_RS12765	0.34	-0.0
2,429,989	-	trpCF	LU632_RS12765	0.34	+1.8
2,429,989	-	trpCF	LU632_RS12765	0.34	-1.2
2,430,030	-	trpCF	LU632_RS12765	0.37	-2.0
2,430,150	+	trpCF	LU632_RS12765	0.46	-0.4
2,430,151	-	trpCF	LU632_RS12765	0.46	-0.6
2,430,178	-	trpCF	LU632_RS12765	0.48	-1.7
2,430,184	+	trpCF	LU632_RS12765	0.48	-1.7
2,430,184	+	trpCF	LU632_RS12765	0.48	+0.7
2,430,298	-	trpCF	LU632_RS12765	0.57	+1.2
2,430,358	+	trpCF	LU632_RS12765	0.61	-0.4
2,430,359	-	trpCF	LU632_RS12765	0.61	-3.1
2,430,441	+	trpCF	LU632_RS12765	0.67	-0.1
2,430,441	+	trpCF	LU632_RS12765	0.67	+0.1
2,430,442	-	trpCF	LU632_RS12765	0.67	-0.1
2,430,442	-	trpCF	LU632_RS12765	0.67	-0.0
2,430,445	+	trpCF	LU632_RS12765	0.68	-0.4
2,430,445	+	trpCF	LU632_RS12765	0.68	-2.5
2,430,446	-	trpCF	LU632_RS12765	0.68	-1.9