Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10990

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
2,096,365	+		LU632_RS10980	0.75	-0.3
2,096,367	+		LU632_RS10980	0.75	-1.1
2,096,394	+		LU632_RS10980	0.77	-3.1
2,096,395	-		LU632_RS10980	0.77	+1.1
2,096,436	+		LU632_RS10980	0.80	-0.3
2,096,564	-		LU632_RS10980	0.88	+0.6
2,096,604	+				+0.1
2,096,605	-				-0.3
2,096,607	+				+1.3
2,096,608	-				+0.4
2,096,608	-				+0.1
2,096,608	-				-1.4
2,096,608	-				-1.1
2,096,743	-				-1.4
2,096,779	+				-2.3
2,096,822	+		LU632_RS10985	0.16	+1.8
2,096,836	+		LU632_RS10985	0.19	+0.6
2,096,852	+		LU632_RS10985	0.23	-0.4
2,096,852	+		LU632_RS10985	0.23	-1.2
2,096,853	-		LU632_RS10985	0.24	-3.6
2,096,914	-		LU632_RS10985	0.39	+1.2
2,097,058	+		LU632_RS10985	0.76	+0.3
2,097,059	-		LU632_RS10985	0.77	+1.3
2,097,120	-				-0.5
2,097,149	+				-0.0
2,097,149	+				-1.8
2,097,150	-				+1.2
2,097,150	-				-1.6
2,097,150	-				-0.9
2,097,189	-				-0.4
2,097,351	-				+0.2
2,097,400	+				+0.2
2,097,405	+				+1.5
2,097,405	+				+2.3
2,097,405	+				+0.9
2,097,405	+				+0.2
2,097,430	-				+0.1
2,097,432	+		LU632_RS10990	0.10	+1.5
2,097,432	+		LU632_RS10990	0.10	+1.3
2,097,432	+		LU632_RS10990	0.10	-0.7
2,097,433	-		LU632_RS10990	0.10	-0.1
2,097,519	+		LU632_RS10990	0.15	+1.7
2,097,531	-		LU632_RS10990	0.16	+0.2
2,097,751	+		LU632_RS10990	0.28	+1.1
2,097,752	-		LU632_RS10990	0.28	-0.0
2,097,806	-		LU632_RS10990	0.31	-0.6
2,097,914	-		LU632_RS10990	0.37	+1.6
2,097,978	-		LU632_RS10990	0.41	+0.8
2,098,063	-		LU632_RS10990	0.45	+1.6
2,098,063	-		LU632_RS10990	0.45	+0.5
2,098,127	-		LU632_RS10990	0.49	+1.0
2,098,175	+		LU632_RS10990	0.52	+1.6
2,098,176	-		LU632_RS10990	0.52	+0.9
2,098,307	+		LU632_RS10990	0.59	+1.2
2,098,308	-		LU632_RS10990	0.59	+0.8
2,098,308	-		LU632_RS10990	0.59	+0.4
2,098,360	-		LU632_RS10990	0.62	+1.0
2,098,425	+		LU632_RS10990	0.66	+1.0
2,098,425	+		LU632_RS10990	0.66	+1.1
2,098,425	+		LU632_RS10990	0.66	+0.2
2,098,431	+		LU632_RS10990	0.66	+0.7
2,098,464	+		LU632_RS10990	0.68	+0.8
2,098,484	+		LU632_RS10990	0.69	+1.8
2,098,485	-		LU632_RS10990	0.69	+1.1
2,098,553	+		LU632_RS10990	0.73	+2.1
2,098,605	+		LU632_RS10990	0.76	+0.6
2,098,724	-		LU632_RS10990	0.83	+0.5
2,098,764	+		LU632_RS10990	0.85	+0.6
2,098,764	+		LU632_RS10990	0.85	+0.7
2,098,765	-		LU632_RS10990	0.85	+0.7
2,098,866	-				+0.8
2,098,894	-				+0.7
2,098,982	-				+0.4
2,099,081	+				-1.4
2,099,084	+				+1.5
2,099,086	+				+0.7
2,099,087	-				-0.2
2,099,105	-				-0.8
2,099,314	-				+0.2
2,099,371	+				-0.3
2,099,412	+				-0.2
2,099,462	+				-0.4
2,099,485	+				-0.6
2,099,489	+				-1.2
2,099,489	+				-0.2
2,099,490	-				-0.3
2,099,636	-		LU632_RS10995	0.19	+1.4
2,099,663	+		LU632_RS10995	0.21	+0.7
2,099,664	-		LU632_RS10995	0.21	+1.6
2,099,664	-		LU632_RS10995	0.21	+0.2
2,099,665	+		LU632_RS10995	0.21	+0.4
2,099,666	-		LU632_RS10995	0.21	-1.2
2,099,666	-		LU632_RS10995	0.21	-1.3
2,099,668	-		LU632_RS10995	0.21	+1.0
2,099,730	+		LU632_RS10995	0.25	+0.0
2,099,730	+		LU632_RS10995	0.25	+0.4
2,099,731	-		LU632_RS10995	0.25	-2.5
2,099,788	+		LU632_RS10995	0.30	+0.0
2,099,998	+		LU632_RS10995	0.45	+0.2
2,099,999	-		LU632_RS10995	0.45	+0.6