Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10800

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
2,059,589	-	tssM	LU632_RS10795	0.53	-1.4
2,059,664	-	tssM	LU632_RS10795	0.57	+0.4
2,059,664	-	tssM	LU632_RS10795	0.57	-1.1
2,059,664	-	tssM	LU632_RS10795	0.57	-0.7
2,059,717	+	tssM	LU632_RS10795	0.60	+1.6
2,059,889	+	tssM	LU632_RS10795	0.68	+2.1
2,060,111	+	tssM	LU632_RS10795	0.78	+0.7
2,060,154	+	tssM	LU632_RS10795	0.80	-2.9
2,060,154	+	tssM	LU632_RS10795	0.80	+0.6
2,060,154	+	tssM	LU632_RS10795	0.80	+0.3
2,060,155	-	tssM	LU632_RS10795	0.80	-0.8
2,060,203	+	tssM	LU632_RS10795	0.83	-1.0
2,060,203	+	tssM	LU632_RS10795	0.83	+0.5
2,060,203	+	tssM	LU632_RS10795	0.83	+0.6
2,060,204	-	tssM	LU632_RS10795	0.83	+0.3
2,060,206	-	tssM	LU632_RS10795	0.83	-0.1
2,060,335	+	tssM	LU632_RS10795	0.89	-1.4
2,060,336	-	tssM	LU632_RS10795	0.89	-2.6
2,060,340	-	tssM	LU632_RS10795	0.89	+0.5
2,060,391	-				+1.0
2,060,406	+				-0.2
2,060,407	-				+1.5
2,060,407	-				-0.4
2,060,407	-				-1.5
2,060,412	-				+1.6
2,060,412	-				+0.5
2,060,484	-				-2.1
2,060,495	-				+0.6
2,060,564	+				-1.1
2,060,615	+				-1.5
2,060,729	-	icmH	LU632_RS10800	0.13	-0.0
2,060,784	+	icmH	LU632_RS10800	0.17	+0.8
2,060,785	-	icmH	LU632_RS10800	0.17	+0.1
2,060,792	+	icmH	LU632_RS10800	0.18	-0.2
2,060,792	+	icmH	LU632_RS10800	0.18	-2.2
2,060,793	-	icmH	LU632_RS10800	0.18	+0.9
2,060,793	-	icmH	LU632_RS10800	0.18	-0.3
2,060,795	+	icmH	LU632_RS10800	0.18	+1.2
2,060,795	+	icmH	LU632_RS10800	0.18	+1.0
2,060,851	+	icmH	LU632_RS10800	0.23	-0.5
2,060,853	+	icmH	LU632_RS10800	0.23	+1.6
2,060,854	-	icmH	LU632_RS10800	0.23	-0.3
2,060,884	-	icmH	LU632_RS10800	0.26	-0.1
2,061,136	-	icmH	LU632_RS10800	0.46	+0.1
2,061,169	+	icmH	LU632_RS10800	0.49	-0.4
2,061,217	-	icmH	LU632_RS10800	0.53	+1.4
2,061,368	-	icmH	LU632_RS10800	0.65	-0.5
2,061,377	+	icmH	LU632_RS10800	0.66	+0.7
2,061,427	-	icmH	LU632_RS10800	0.70	+0.6
2,061,436	+	icmH	LU632_RS10800	0.71	-1.0
2,061,566	+	icmH	LU632_RS10800	0.82	+0.3
2,061,580	-	icmH	LU632_RS10800	0.83	+1.2
2,061,580	-	icmH	LU632_RS10800	0.83	-0.1
2,061,708	+				+0.1
2,061,708	+				+0.5
2,061,925	+				+1.2
2,061,958	+		LU632_RS10805	0.15	-0.8
2,062,141	+		LU632_RS10805	0.51	-1.7
2,062,185	+		LU632_RS10805	0.60	+0.1
2,062,185	+		LU632_RS10805	0.60	+0.5
2,062,186	-		LU632_RS10805	0.60	+0.6
2,062,186	-		LU632_RS10805	0.60	-0.2
2,062,186	-		LU632_RS10805	0.60	+0.4
2,062,187	+		LU632_RS10805	0.60	-0.6
2,062,188	-		LU632_RS10805	0.60	-1.0
2,062,188	-		LU632_RS10805	0.60	-0.4
2,062,253	+		LU632_RS10805	0.73	+0.4
2,062,254	-		LU632_RS10805	0.73	+0.0
2,062,254	-		LU632_RS10805	0.73	+1.2
2,062,259	-		LU632_RS10805	0.74	+2.8
2,062,367	+				-0.9
2,062,392	-				+0.7
2,062,466	-				+0.7
2,062,470	+				-0.2
2,062,542	+				+2.5
2,062,549	+				+0.7
2,062,578	-		LU632_RS10810	0.13	+0.5
2,062,616	+		LU632_RS10810	0.28	+0.7
2,062,620	+		LU632_RS10810	0.29	-0.4
2,062,699	+		LU632_RS10810	0.59	+1.2
2,062,699	+		LU632_RS10810	0.59	-0.0
2,062,716	+		LU632_RS10810	0.66	-1.0
2,062,717	-		LU632_RS10810	0.66	-0.4
2,062,771	-		LU632_RS10810	0.86	+0.8