Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09445

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
1,788,213	-	ybiO	LU632_RS09440	0.66	+1.8
1,788,248	+	ybiO	LU632_RS09440	0.68	-2.4
1,788,391	+	ybiO	LU632_RS09440	0.77	+0.7
1,788,391	+	ybiO	LU632_RS09440	0.77	+2.3
1,788,391	+	ybiO	LU632_RS09440	0.77	-1.4
1,788,391	+	ybiO	LU632_RS09440	0.77	+0.3
1,788,392	-	ybiO	LU632_RS09440	0.77	+0.2
1,788,392	-	ybiO	LU632_RS09440	0.77	-0.4
1,788,392	-	ybiO	LU632_RS09440	0.77	+0.9
1,788,392	-	ybiO	LU632_RS09440	0.77	+0.6
1,788,392	-	ybiO	LU632_RS09440	0.77	-1.0
1,788,432	+	ybiO	LU632_RS09440	0.79	+2.1
1,788,433	-	ybiO	LU632_RS09440	0.79	+0.1
1,788,472	+	ybiO	LU632_RS09440	0.81	+0.1
1,788,473	-	ybiO	LU632_RS09440	0.81	+0.4
1,788,480	+	ybiO	LU632_RS09440	0.82	-0.8
1,788,480	+	ybiO	LU632_RS09440	0.82	+0.1
1,788,480	+	ybiO	LU632_RS09440	0.82	+1.2
1,788,481	-	ybiO	LU632_RS09440	0.82	-0.8
1,788,481	-	ybiO	LU632_RS09440	0.82	-0.8
1,788,483	+	ybiO	LU632_RS09440	0.82	+1.1
1,788,549	+	ybiO	LU632_RS09440	0.86	+0.2
1,788,549	+	ybiO	LU632_RS09440	0.86	-0.2
1,788,550	-	ybiO	LU632_RS09440	0.86	+0.9
1,788,629	-				+0.4
1,788,645	+				-2.0
1,788,674	-				-1.0
1,788,737	+				+1.9
1,788,755	-				-1.0
1,788,803	-				+2.1
1,788,832	-				-0.1
1,788,895	-				-1.6
1,788,922	-				+0.1
1,788,957	+				+1.2
1,788,971	+				-0.4
1,788,996	+				-2.1
1,788,997	-				+1.0
1,789,022	+				-1.7
1,789,023	-				+0.4
1,789,049	+				-0.8
1,789,193	-	glnQ	LU632_RS09445	0.12	-1.9
1,789,319	+	glnQ	LU632_RS09445	0.29	-2.7
1,789,320	-	glnQ	LU632_RS09445	0.29	-0.6
1,789,320	-	glnQ	LU632_RS09445	0.29	-0.7
1,789,704	-	glnQ	LU632_RS09445	0.82	-0.6
1,789,775	-				+0.2
1,789,778	-				+0.1
1,789,778	-				-0.4
1,789,808	-				-1.0
1,789,896	-	glnP	LU632_RS09450	0.10	-0.4
1,789,899	+	glnP	LU632_RS09450	0.11	-0.8
1,789,919	-	glnP	LU632_RS09450	0.14	-3.8
1,789,993	-	glnP	LU632_RS09450	0.25	+1.2
1,790,049	+	glnP	LU632_RS09450	0.33	+0.2
1,790,050	-	glnP	LU632_RS09450	0.34	+0.1
1,790,056	+	glnP	LU632_RS09450	0.35	-0.3
1,790,079	-	glnP	LU632_RS09450	0.38	-2.5
1,790,175	+	glnP	LU632_RS09450	0.53	-0.8
1,790,176	-	glnP	LU632_RS09450	0.53	+1.0
1,790,177	+	glnP	LU632_RS09450	0.53	-2.1
1,790,177	+	glnP	LU632_RS09450	0.53	+0.2
1,790,177	+	glnP	LU632_RS09450	0.53	-1.0
1,790,177	+	glnP	LU632_RS09450	0.53	-0.2
1,790,177	+	glnP	LU632_RS09450	0.53	-0.1
1,790,178	-	glnP	LU632_RS09450	0.53	-0.5
1,790,178	-	glnP	LU632_RS09450	0.53	-0.5
1,790,178	-	glnP	LU632_RS09450	0.53	-1.6
1,790,178	-	glnP	LU632_RS09450	0.53	-0.5
1,790,178	-	glnP	LU632_RS09450	0.53	-1.2
1,790,196	+	glnP	LU632_RS09450	0.56	-1.3
1,790,196	+	glnP	LU632_RS09450	0.56	-0.9
1,790,196	+	glnP	LU632_RS09450	0.56	-1.4
1,790,197	-	glnP	LU632_RS09450	0.56	-1.8
1,790,197	-	glnP	LU632_RS09450	0.56	-0.1
1,790,197	-	glnP	LU632_RS09450	0.56	-1.2
1,790,242	-	glnP	LU632_RS09450	0.63	-0.6
1,790,264	+	glnP	LU632_RS09450	0.66	-0.2
1,790,265	-	glnP	LU632_RS09450	0.66	-0.6
1,790,269	-	glnP	LU632_RS09450	0.67	+0.1
1,790,275	-	glnP	LU632_RS09450	0.68	-1.0
1,790,441	-				-1.2
1,790,488	+				+1.3
1,790,489	-				+0.1
1,790,671	-	glnH	LU632_RS09455	0.14	-1.1
1,790,755	-	glnH	LU632_RS09455	0.25	-1.0
1,790,766	+	glnH	LU632_RS09455	0.27	-1.5
1,790,767	-	glnH	LU632_RS09455	0.27	-0.6
1,790,767	-	glnH	LU632_RS09455	0.27	-3.0
1,790,767	-	glnH	LU632_RS09455	0.27	-1.0
1,790,819	+	glnH	LU632_RS09455	0.34	+0.8
1,790,819	+	glnH	LU632_RS09455	0.34	-2.9
1,790,820	-	glnH	LU632_RS09455	0.34	-1.1