Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09405

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
1,779,951	-	dinG	LU632_RS09400	0.56	+0.2
1,780,049	-	dinG	LU632_RS09400	0.60	+1.4
1,780,049	-	dinG	LU632_RS09400	0.60	-3.1
1,780,227	-	dinG	LU632_RS09400	0.68	+0.2
1,780,253	+	dinG	LU632_RS09400	0.69	-0.1
1,780,269	+	dinG	LU632_RS09400	0.70	-0.3
1,780,279	+	dinG	LU632_RS09400	0.71	+1.8
1,780,358	+	dinG	LU632_RS09400	0.74	-0.3
1,780,577	+	dinG	LU632_RS09400	0.84	+0.2
1,780,727	+				+0.3
1,780,740	+				+0.3
1,780,741	-				+0.6
1,780,758	+				+1.2
1,780,912	-				+0.4
1,780,939	+				-2.1
1,781,008	+				-0.4
1,781,021	+				+1.2
1,781,021	+				+0.1
1,781,030	+				-0.2
1,781,207	+	ybiB	LU632_RS09405	0.27	-0.1
1,781,207	+	ybiB	LU632_RS09405	0.27	-1.2
1,781,208	-	ybiB	LU632_RS09405	0.27	+0.9
1,781,347	+	ybiB	LU632_RS09405	0.41	-2.1
1,781,347	+	ybiB	LU632_RS09405	0.41	-1.0
1,781,348	-	ybiB	LU632_RS09405	0.41	-1.0
1,781,349	+	ybiB	LU632_RS09405	0.41	-0.2
1,781,564	+	ybiB	LU632_RS09405	0.64	-0.6
1,781,564	+	ybiB	LU632_RS09405	0.64	-0.1
1,781,566	+	ybiB	LU632_RS09405	0.64	-2.0
1,781,566	+	ybiB	LU632_RS09405	0.64	-0.0
1,781,567	-	ybiB	LU632_RS09405	0.64	-0.5
1,781,642	+	ybiB	LU632_RS09405	0.72	-1.1
1,781,671	+	ybiB	LU632_RS09405	0.75	+2.1
1,781,849	+				-0.2
1,781,849	+				+1.3
1,781,850	-				-0.8
1,781,850	-				+0.2
1,781,869	-				-0.8
1,781,912	+				-0.3
1,781,915	+				-0.4
1,781,915	+				+0.3
1,781,916	-				-0.5
1,781,928	-				+0.6
1,781,969	+				+0.2
1,781,969	+				+0.8
1,781,969	+				+0.5
1,781,969	+				-0.8
1,781,970	-				-3.2
1,781,970	-				+1.6
1,781,980	+				-0.0
1,781,981	-				+1.0
1,782,044	-				+0.6
1,782,118	+		LU632_RS09410	0.15	-0.7
1,782,119	-		LU632_RS09410	0.15	-1.7
1,782,377	+		LU632_RS09410	0.67	+0.5
1,782,605	-				+0.3
1,782,700	-				-1.2
1,782,711	+				+0.2
1,782,712	-				+0.5
1,782,723	-				-0.7
1,782,729	+				-1.3
1,782,775	+		LU632_RS09415	0.13	+0.3
1,782,776	-		LU632_RS09415	0.13	+1.3
1,782,800	+		LU632_RS09415	0.15	+0.8