Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08760

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
1,644,389	-	asmA	LU632_RS08750	0.79	-1.1
1,644,439	+	asmA	LU632_RS08750	0.82	-2.2
1,644,439	+	asmA	LU632_RS08750	0.82	+1.4
1,644,440	-	asmA	LU632_RS08750	0.82	-0.6
1,644,487	+	asmA	LU632_RS08750	0.84	-0.6
1,644,516	-	asmA	LU632_RS08750	0.86	-1.9
1,644,621	+				-2.7
1,644,646	+				-1.2
1,644,650	+				-3.5
1,644,650	+				-0.7
1,644,651	-				-2.6
1,644,651	-				-2.8
1,644,684	+				-3.3
1,644,685	-				-2.0
1,644,685	-				+1.0
1,644,775	+				+0.1
1,644,776	-				-0.4
1,644,776	-				+0.4
1,644,776	-				-1.2
1,644,894	+				+0.3
1,644,894	+				+0.4
1,644,895	-				-3.5
1,644,895	-				+0.0
1,644,952	-		LU632_RS08755	0.20	-0.1
1,645,016	+		LU632_RS08755	0.36	+0.1
1,645,016	+		LU632_RS08755	0.36	-0.4
1,645,017	-		LU632_RS08755	0.37	-0.8
1,645,017	-		LU632_RS08755	0.37	-0.7
1,645,017	-		LU632_RS08755	0.37	-0.1
1,645,017	-		LU632_RS08755	0.37	-0.1
1,645,017	-		LU632_RS08755	0.37	+0.7
1,645,017	-		LU632_RS08755	0.37	+0.0
1,645,024	-		LU632_RS08755	0.38	-0.5
1,645,079	+		LU632_RS08755	0.53	+0.9
1,645,080	-		LU632_RS08755	0.53	+1.4
1,645,080	-		LU632_RS08755	0.53	-1.6
1,645,080	-		LU632_RS08755	0.53	-0.5
1,645,088	+		LU632_RS08755	0.55	+0.0
1,645,088	+		LU632_RS08755	0.55	-0.5
1,645,089	-		LU632_RS08755	0.55	+1.0
1,645,223	-				-0.9
1,645,282	+				+0.0
1,645,282	+				-1.1
1,645,285	+				+1.7
1,645,286	-				-0.7
1,645,289	+				+0.1
1,645,300	+				+1.7
1,645,301	-				-0.1
1,645,301	-				-0.2
1,646,128	-				+0.4
1,646,402	+				+2.3
1,646,406	+				+3.1
1,646,406	+				+1.8
1,646,411	+				+0.8
1,646,427	-				+3.3
1,646,465	-				+4.7
1,646,472	+				+0.8
1,646,472	+				+3.7
1,646,536	+				+0.0
1,646,613	-				+3.0
1,646,646	-				+3.3
1,646,751	-				+2.8
1,646,751	-				+3.3
1,646,773	+				+2.9
1,646,978	-	wbaP	LU632_RS08765	0.12	+3.5
1,646,987	-	wbaP	LU632_RS08765	0.12	+2.5
1,646,990	-	wbaP	LU632_RS08765	0.13	+1.9
1,647,039	-	wbaP	LU632_RS08765	0.16	+3.5
1,647,040	+	wbaP	LU632_RS08765	0.16	+2.6