Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07090

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07080 and LU632_RS07085 overlap by 4 nucleotidesLU632_RS07085 and LU632_RS07090 are separated by 192 nucleotidesLU632_RS07090 and LU632_RS07095 are separated by 125 nucleotidesLU632_RS07095 and LU632_RS07100 are separated by 9 nucleotides LU632_RS07080: LU632_RS07080 - HNH endonuclease, at 1,342,893 to 1,343,378 _RS07080 LU632_RS07085: LU632_RS07085 - lysozyme, at 1,343,375 to 1,343,800 _RS07085 LU632_RS07090: LU632_RS07090 - Rz1 family lipoprotein, at 1,343,993 to 1,344,190 _RS07090 LU632_RS07095: LU632_RS07095 - hypothetical protein, at 1,344,316 to 1,345,035 _RS07095 LU632_RS07100: LU632_RS07100 - hypothetical protein, at 1,345,045 to 1,345,473 _RS07100 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1342.994 kb on + strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.252 kb on + strand, within LU632_RS07080at 1343.276 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.286 kb on + strand, within LU632_RS07080at 1343.318 kb on + strand, within LU632_RS07080at 1343.353 kb on - strandat 1343.354 kb on + strandat 1343.355 kb on - strandat 1343.355 kb on - strandat 1343.382 kb on + strandat 1343.382 kb on + strandat 1343.407 kb on + strandat 1343.438 kb on + strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.480 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.694 kb on - strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.869 kb on + strandat 1343.873 kb on + strandat 1343.873 kb on + strandat 1343.874 kb on - strandat 1343.874 kb on - strandat 1343.974 kb on + strandat 1344.146 kb on - strand, within LU632_RS07090at 1344.206 kb on - strandat 1344.230 kb on - strandat 1344.271 kb on - strandat 1344.271 kb on - strandat 1344.272 kb on + strandat 1344.273 kb on - strandat 1344.440 kb on - strand, within LU632_RS07095at 1344.440 kb on - strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.450 kb on - strand, within LU632_RS07095at 1344.450 kb on - strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.452 kb on - strand, within LU632_RS07095at 1344.452 kb on - strand, within LU632_RS07095at 1344.532 kb on + strand, within LU632_RS07095at 1344.532 kb on + strand, within LU632_RS07095at 1344.533 kb on - strand, within LU632_RS07095at 1344.533 kb on - strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.563 kb on - strand, within LU632_RS07095at 1344.627 kb on + strand, within LU632_RS07095at 1344.627 kb on + strand, within LU632_RS07095at 1344.628 kb on - strand, within LU632_RS07095at 1344.629 kb on - strand, within LU632_RS07095at 1344.720 kb on + strand, within LU632_RS07095at 1344.774 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.792 kb on + strand, within LU632_RS07095at 1344.792 kb on + strand, within LU632_RS07095at 1344.793 kb on - strand, within LU632_RS07095at 1344.793 kb on - strand, within LU632_RS07095at 1344.835 kb on - strand, within LU632_RS07095at 1344.905 kb on + strand, within LU632_RS07095at 1344.905 kb on + strand, within LU632_RS07095at 1344.905 kb on + strand, within LU632_RS07095at 1344.906 kb on - strand, within LU632_RS07095at 1344.906 kb on - strand, within LU632_RS07095at 1344.960 kb on + strand, within LU632_RS07095at 1344.993 kb on + strandat 1345.033 kb on + strandat 1345.034 kb on - strandat 1345.053 kb on + strandat 1345.053 kb on + strandat 1345.053 kb on + strandat 1345.053 kb on + strandat 1345.054 kb on - strandat 1345.054 kb on - strandat 1345.054 kb on - strandat 1345.169 kb on - strand, within LU632_RS07100at 1345.169 kb on - strand, within LU632_RS07100

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
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1,342,994 + LU632_RS07080 0.21 +0.5
1,343,123 - LU632_RS07080 0.47 -0.2
1,343,123 - LU632_RS07080 0.47 +0.7
1,343,123 - LU632_RS07080 0.47 +0.1
1,343,252 + LU632_RS07080 0.74 +1.0
1,343,276 + LU632_RS07080 0.79 +0.0
1,343,278 + LU632_RS07080 0.79 -1.2
1,343,278 + LU632_RS07080 0.79 -3.5
1,343,278 + LU632_RS07080 0.79 -0.5
1,343,278 + LU632_RS07080 0.79 -0.2
1,343,279 - LU632_RS07080 0.79 -1.0
1,343,279 - LU632_RS07080 0.79 -1.5
1,343,286 + LU632_RS07080 0.81 +0.7
1,343,318 + LU632_RS07080 0.87 +0.7
1,343,353 - -0.4
1,343,354 + +0.4
1,343,355 - -0.7
1,343,355 - -0.7
1,343,382 + -0.2
1,343,382 + +0.2
1,343,407 + -1.2
1,343,438 + LU632_RS07085 0.15 +1.4
1,343,439 - LU632_RS07085 0.15 +0.0
1,343,439 - LU632_RS07085 0.15 +0.0
1,343,439 - LU632_RS07085 0.15 -0.7
1,343,439 - LU632_RS07085 0.15 -0.9
1,343,439 - LU632_RS07085 0.15 +0.7
1,343,480 - LU632_RS07085 0.25 +2.9
1,343,532 - LU632_RS07085 0.37 +2.7
1,343,532 - LU632_RS07085 0.37 +0.4
1,343,694 - LU632_RS07085 0.75 -0.7
1,343,729 + LU632_RS07085 0.83 -0.4
1,343,729 + LU632_RS07085 0.83 -0.3
1,343,729 + LU632_RS07085 0.83 +0.2
1,343,729 + LU632_RS07085 0.83 -2.2
1,343,730 - LU632_RS07085 0.83 -2.0
1,343,730 - LU632_RS07085 0.83 -0.1
1,343,730 - LU632_RS07085 0.83 -1.4
1,343,730 - LU632_RS07085 0.83 +0.0
1,343,869 + -2.5
1,343,873 + +0.6
1,343,873 + +1.1
1,343,874 - +1.8
1,343,874 - -0.7
1,343,974 + -0.3
1,344,146 - LU632_RS07090 0.77 -2.3
1,344,206 - +0.7
1,344,230 - -0.8
1,344,271 - -0.2
1,344,271 - -1.9
1,344,272 + +0.4
1,344,273 - -2.7
1,344,440 - LU632_RS07095 0.17 -1.1
1,344,440 - LU632_RS07095 0.17 +1.2
1,344,449 + LU632_RS07095 0.18 +0.2
1,344,449 + LU632_RS07095 0.18 -0.2
1,344,449 + LU632_RS07095 0.18 +0.5
1,344,449 + LU632_RS07095 0.18 +0.8
1,344,449 + LU632_RS07095 0.18 +1.0
1,344,450 - LU632_RS07095 0.19 -3.0
1,344,450 - LU632_RS07095 0.19 -0.5
1,344,451 + LU632_RS07095 0.19 +1.4
1,344,451 + LU632_RS07095 0.19 -0.3
1,344,451 + LU632_RS07095 0.19 -0.9
1,344,451 + LU632_RS07095 0.19 +0.9
1,344,452 - LU632_RS07095 0.19 +1.4
1,344,452 - LU632_RS07095 0.19 -1.6
1,344,532 + LU632_RS07095 0.30 -0.2
1,344,532 + LU632_RS07095 0.30 -0.5
1,344,533 - LU632_RS07095 0.30 -0.2
1,344,533 - LU632_RS07095 0.30 +0.2
1,344,562 + LU632_RS07095 0.34 -0.4
1,344,562 + LU632_RS07095 0.34 +1.3
1,344,562 + LU632_RS07095 0.34 +1.0
1,344,563 - LU632_RS07095 0.34 -0.3
1,344,627 + LU632_RS07095 0.43 -0.3
1,344,627 + LU632_RS07095 0.43 +0.3
1,344,628 - LU632_RS07095 0.43 -2.7
1,344,629 - LU632_RS07095 0.43 +0.1
1,344,720 + LU632_RS07095 0.56 +0.5
1,344,774 + LU632_RS07095 0.64 -1.4
1,344,778 + LU632_RS07095 0.64 +0.4
1,344,778 + LU632_RS07095 0.64 -1.2
1,344,778 + LU632_RS07095 0.64 +0.7
1,344,778 + LU632_RS07095 0.64 -1.3
1,344,792 + LU632_RS07095 0.66 +0.3
1,344,792 + LU632_RS07095 0.66 +0.4
1,344,793 - LU632_RS07095 0.66 +1.4
1,344,793 - LU632_RS07095 0.66 +0.4
1,344,835 - LU632_RS07095 0.72 -0.6
1,344,905 + LU632_RS07095 0.82 -0.2
1,344,905 + LU632_RS07095 0.82 +0.0
1,344,905 + LU632_RS07095 0.82 +0.4
1,344,906 - LU632_RS07095 0.82 -0.1
1,344,906 - LU632_RS07095 0.82 +0.8
1,344,960 + LU632_RS07095 0.89 -0.1
1,344,993 + +0.8
1,345,033 + +0.1
1,345,034 - -2.7
1,345,053 + +1.4
1,345,053 + +0.0
1,345,053 + -0.1
1,345,053 + +1.3
1,345,054 - +0.4
1,345,054 - +2.0
1,345,054 - +1.8
1,345,169 - LU632_RS07100 0.29 -1.6
1,345,169 - LU632_RS07100 0.29 -1.1

Or see this region's nucleotide sequence