Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysG and cysD are separated by 9 nucleotides cysD and cysN are separated by 9 nucleotides cysN and cysC overlap by 1 nucleotides cysC and LU632_RS06440 are separated by 55 nucleotides
LU632_RS06420: cysG - siroheme synthase CysG, at 1,234,795 to 1,236,210
cysG
LU632_RS06425: cysD - sulfate adenylyltransferase subunit CysD, at 1,236,220 to 1,237,128
cysD
LU632_RS06430: cysN - sulfate adenylyltransferase subunit CysN, at 1,237,138 to 1,238,565
cysN
LU632_RS06435: cysC - adenylyl-sulfate kinase, at 1,238,565 to 1,239,170
cysC
LU632_RS06440: LU632_RS06440 - DUF3561 family protein, at 1,239,226 to 1,239,546
_RS06440
Position (kb) 1237
1238
1239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1236.267 kb on + strand at 1236.267 kb on + strand at 1236.268 kb on - strand at 1236.273 kb on + strand at 1236.319 kb on + strand, within cysD at 1236.320 kb on - strand, within cysD at 1236.320 kb on - strand, within cysD at 1236.363 kb on + strand, within cysD at 1236.363 kb on + strand, within cysD at 1236.401 kb on + strand, within cysD at 1236.402 kb on - strand, within cysD at 1236.402 kb on - strand, within cysD at 1236.402 kb on - strand, within cysD at 1236.559 kb on - strand, within cysD at 1236.595 kb on + strand, within cysD at 1236.664 kb on + strand, within cysD at 1236.726 kb on + strand, within cysD at 1236.727 kb on - strand, within cysD at 1236.730 kb on + strand, within cysD at 1236.730 kb on + strand, within cysD at 1236.730 kb on + strand, within cysD at 1236.730 kb on + strand, within cysD at 1236.730 kb on + strand, within cysD at 1236.731 kb on - strand, within cysD at 1236.731 kb on - strand, within cysD at 1236.731 kb on - strand, within cysD at 1236.748 kb on - strand, within cysD at 1236.825 kb on + strand, within cysD at 1236.844 kb on + strand, within cysD at 1237.143 kb on + strand at 1237.150 kb on - strand at 1237.260 kb on + strand at 1237.280 kb on + strand at 1237.336 kb on - strand, within cysN at 1237.416 kb on + strand, within cysN at 1237.417 kb on - strand, within cysN at 1237.439 kb on - strand, within cysN at 1237.458 kb on + strand, within cysN at 1237.464 kb on + strand, within cysN at 1237.495 kb on + strand, within cysN at 1237.495 kb on - strand, within cysN at 1237.496 kb on - strand, within cysN at 1237.496 kb on - strand, within cysN at 1237.498 kb on - strand, within cysN at 1237.597 kb on - strand, within cysN at 1237.597 kb on - strand, within cysN at 1237.617 kb on + strand, within cysN at 1237.617 kb on + strand, within cysN at 1237.618 kb on - strand, within cysN at 1237.734 kb on + strand, within cysN at 1237.735 kb on - strand, within cysN at 1237.804 kb on + strand, within cysN at 1237.804 kb on + strand, within cysN at 1237.804 kb on + strand, within cysN at 1237.805 kb on - strand, within cysN at 1237.891 kb on + strand, within cysN at 1237.891 kb on + strand, within cysN at 1237.891 kb on + strand, within cysN at 1237.891 kb on + strand, within cysN at 1237.891 kb on + strand, within cysN at 1237.892 kb on - strand, within cysN at 1237.980 kb on - strand, within cysN at 1238.069 kb on + strand, within cysN at 1238.205 kb on + strand, within cysN at 1238.548 kb on - strand at 1238.721 kb on + strand, within cysC at 1238.721 kb on + strand, within cysC at 1238.742 kb on + strand, within cysC at 1238.743 kb on - strand, within cysC at 1238.810 kb on + strand, within cysC at 1238.819 kb on + strand, within cysC at 1238.819 kb on + strand, within cysC at 1238.819 kb on + strand, within cysC at 1238.885 kb on + strand, within cysC at 1239.007 kb on - strand, within cysC at 1239.008 kb on + strand, within cysC at 1239.061 kb on - strand, within cysC at 1239.061 kb on - strand, within cysC at 1239.086 kb on - strand, within cysC at 1239.086 kb on - strand, within cysC at 1239.159 kb on - strand at 1239.221 kb on + strand at 1239.225 kb on + strand at 1239.225 kb on + strand at 1239.225 kb on + strand at 1239.225 kb on + strand at 1239.225 kb on + strand at 1239.225 kb on + strand at 1239.226 kb on - strand at 1239.226 kb on - strand at 1239.226 kb on - strand at 1239.366 kb on + strand, within LU632_RS06440 at 1239.385 kb on + strand, within LU632_RS06440 at 1239.385 kb on + strand, within LU632_RS06440 at 1239.387 kb on + strand, within LU632_RS06440 at 1239.388 kb on - strand, within LU632_RS06440 at 1239.469 kb on - strand, within LU632_RS06440 at 1239.469 kb on - strand, within LU632_RS06440 at 1239.550 kb on - strand at 1239.550 kb on - strand at 1239.553 kb on + strand at 1239.554 kb on - strand at 1239.554 kb on - strand at 1239.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 1,236,267 + -0.9 1,236,267 + +1.8 1,236,268 - +0.4 1,236,273 + -0.4 1,236,319 + cysD LU632_RS06425 0.11 -1.2 1,236,320 - cysD LU632_RS06425 0.11 -0.4 1,236,320 - cysD LU632_RS06425 0.11 -0.9 1,236,363 + cysD LU632_RS06425 0.16 -0.1 1,236,363 + cysD LU632_RS06425 0.16 +0.1 1,236,401 + cysD LU632_RS06425 0.20 +2.8 1,236,402 - cysD LU632_RS06425 0.20 +0.9 1,236,402 - cysD LU632_RS06425 0.20 -0.3 1,236,402 - cysD LU632_RS06425 0.20 +0.1 1,236,559 - cysD LU632_RS06425 0.37 -0.6 1,236,595 + cysD LU632_RS06425 0.41 -0.2 1,236,664 + cysD LU632_RS06425 0.49 -0.2 1,236,726 + cysD LU632_RS06425 0.56 +0.3 1,236,727 - cysD LU632_RS06425 0.56 +0.4 1,236,730 + cysD LU632_RS06425 0.56 +0.2 1,236,730 + cysD LU632_RS06425 0.56 +1.3 1,236,730 + cysD LU632_RS06425 0.56 -0.9 1,236,730 + cysD LU632_RS06425 0.56 -0.3 1,236,730 + cysD LU632_RS06425 0.56 +0.5 1,236,731 - cysD LU632_RS06425 0.56 -0.2 1,236,731 - cysD LU632_RS06425 0.56 +0.9 1,236,731 - cysD LU632_RS06425 0.56 -0.1 1,236,748 - cysD LU632_RS06425 0.58 +0.1 1,236,825 + cysD LU632_RS06425 0.67 -0.9 1,236,844 + cysD LU632_RS06425 0.69 -1.1 1,237,143 + -0.5 1,237,150 - -0.4 1,237,260 + +0.1 1,237,280 + -0.7 1,237,336 - cysN LU632_RS06430 0.14 +1.6 1,237,416 + cysN LU632_RS06430 0.19 +0.1 1,237,417 - cysN LU632_RS06430 0.20 -1.1 1,237,439 - cysN LU632_RS06430 0.21 +1.4 1,237,458 + cysN LU632_RS06430 0.22 -0.8 1,237,464 + cysN LU632_RS06430 0.23 -0.3 1,237,495 + cysN LU632_RS06430 0.25 +1.0 1,237,495 - cysN LU632_RS06430 0.25 +1.6 1,237,496 - cysN LU632_RS06430 0.25 +0.6 1,237,496 - cysN LU632_RS06430 0.25 -0.7 1,237,498 - cysN LU632_RS06430 0.25 -0.9 1,237,597 - cysN LU632_RS06430 0.32 +0.6 1,237,597 - cysN LU632_RS06430 0.32 -1.6 1,237,617 + cysN LU632_RS06430 0.34 +1.1 1,237,617 + cysN LU632_RS06430 0.34 +1.4 1,237,618 - cysN LU632_RS06430 0.34 +0.4 1,237,734 + cysN LU632_RS06430 0.42 +0.1 1,237,735 - cysN LU632_RS06430 0.42 +0.8 1,237,804 + cysN LU632_RS06430 0.47 +0.4 1,237,804 + cysN LU632_RS06430 0.47 -0.1 1,237,804 + cysN LU632_RS06430 0.47 +1.1 1,237,805 - cysN LU632_RS06430 0.47 +3.4 1,237,891 + cysN LU632_RS06430 0.53 -1.2 1,237,891 + cysN LU632_RS06430 0.53 -1.5 1,237,891 + cysN LU632_RS06430 0.53 +0.7 1,237,891 + cysN LU632_RS06430 0.53 +1.9 1,237,891 + cysN LU632_RS06430 0.53 +0.4 1,237,892 - cysN LU632_RS06430 0.53 +2.2 1,237,980 - cysN LU632_RS06430 0.59 -2.4 1,238,069 + cysN LU632_RS06430 0.65 +0.5 1,238,205 + cysN LU632_RS06430 0.75 -2.9 1,238,548 - +1.1 1,238,721 + cysC LU632_RS06435 0.26 -0.0 1,238,721 + cysC LU632_RS06435 0.26 +0.4 1,238,742 + cysC LU632_RS06435 0.29 +2.3 1,238,743 - cysC LU632_RS06435 0.29 +1.4 1,238,810 + cysC LU632_RS06435 0.40 -0.1 1,238,819 + cysC LU632_RS06435 0.42 +1.4 1,238,819 + cysC LU632_RS06435 0.42 -1.9 1,238,819 + cysC LU632_RS06435 0.42 -2.3 1,238,885 + cysC LU632_RS06435 0.53 -1.2 1,239,007 - cysC LU632_RS06435 0.73 +2.0 1,239,008 + cysC LU632_RS06435 0.73 +0.0 1,239,061 - cysC LU632_RS06435 0.82 +0.0 1,239,061 - cysC LU632_RS06435 0.82 +0.9 1,239,086 - cysC LU632_RS06435 0.86 -0.4 1,239,086 - cysC LU632_RS06435 0.86 -0.5 1,239,159 - -0.6 1,239,221 + +0.9 1,239,225 + +1.0 1,239,225 + +0.4 1,239,225 + +0.3 1,239,225 + +1.4 1,239,225 + +1.2 1,239,225 + +0.4 1,239,226 - +1.4 1,239,226 - -3.1 1,239,226 - +1.0 1,239,366 + LU632_RS06440 0.44 +0.2 1,239,385 + LU632_RS06440 0.50 -0.1 1,239,385 + LU632_RS06440 0.50 -1.1 1,239,387 + LU632_RS06440 0.50 +0.5 1,239,388 - LU632_RS06440 0.50 +0.3 1,239,469 - LU632_RS06440 0.76 +0.1 1,239,469 - LU632_RS06440 0.76 +0.5 1,239,550 - -0.4 1,239,550 - -0.1 1,239,553 + -1.0 1,239,554 - -1.3 1,239,554 - -0.0 1,239,554 - +0.7
Or see this region's nucleotide sequence