Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06410 and LU632_RS06415 are separated by 435 nucleotides LU632_RS06415 and cysG are separated by 358 nucleotides
LU632_RS06410: LU632_RS06410 - phosphoadenylyl-sulfate reductase, at 1,233,060 to 1,233,791
_RS06410
LU632_RS06415: LU632_RS06415 - hypothetical protein, at 1,234,227 to 1,234,436
_RS06415
LU632_RS06420: cysG - siroheme synthase CysG, at 1,234,795 to 1,236,210
cysG
Position (kb) 1234
1235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1233.318 kb on + strand, within LU632_RS06410 at 1233.451 kb on - strand, within LU632_RS06410 at 1233.684 kb on + strand, within LU632_RS06410 at 1233.702 kb on - strand, within LU632_RS06410 at 1233.789 kb on + strand at 1233.867 kb on - strand at 1233.867 kb on - strand at 1233.867 kb on - strand at 1233.963 kb on + strand at 1234.008 kb on - strand at 1234.084 kb on + strand at 1234.084 kb on + strand at 1234.087 kb on + strand at 1234.087 kb on + strand at 1234.101 kb on + strand at 1234.105 kb on + strand at 1234.125 kb on + strand at 1234.175 kb on - strand at 1234.177 kb on - strand at 1234.177 kb on - strand at 1234.181 kb on + strand at 1234.250 kb on - strand, within LU632_RS06415 at 1234.322 kb on + strand, within LU632_RS06415 at 1234.447 kb on + strand at 1234.447 kb on + strand at 1234.447 kb on + strand at 1234.465 kb on + strand at 1234.465 kb on + strand at 1234.465 kb on + strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.512 kb on - strand at 1234.514 kb on + strand at 1234.584 kb on - strand at 1234.584 kb on - strand at 1234.723 kb on + strand at 1234.735 kb on - strand at 1234.757 kb on - strand at 1234.778 kb on + strand at 1234.802 kb on - strand at 1234.802 kb on - strand at 1235.040 kb on + strand, within cysG at 1235.127 kb on + strand, within cysG at 1235.128 kb on - strand, within cysG at 1235.139 kb on + strand, within cysG at 1235.139 kb on + strand, within cysG at 1235.140 kb on - strand, within cysG at 1235.140 kb on - strand, within cysG at 1235.140 kb on - strand, within cysG at 1235.140 kb on - strand, within cysG at 1235.210 kb on + strand, within cysG at 1235.302 kb on - strand, within cysG at 1235.344 kb on - strand, within cysG at 1235.344 kb on - strand, within cysG
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 1,233,318 + LU632_RS06410 0.35 -1.5 1,233,451 - LU632_RS06410 0.53 -2.9 1,233,684 + LU632_RS06410 0.85 -2.1 1,233,702 - LU632_RS06410 0.88 -0.9 1,233,789 + -0.0 1,233,867 - +0.3 1,233,867 - +0.3 1,233,867 - -1.6 1,233,963 + +0.1 1,234,008 - -1.9 1,234,084 + +0.4 1,234,084 + +0.3 1,234,087 + -1.1 1,234,087 + -0.8 1,234,101 + +0.2 1,234,105 + -1.9 1,234,125 + +1.0 1,234,175 - +0.6 1,234,177 - -0.1 1,234,177 - +0.0 1,234,181 + +0.2 1,234,250 - LU632_RS06415 0.11 +0.8 1,234,322 + LU632_RS06415 0.45 +0.4 1,234,447 + -2.3 1,234,447 + -0.9 1,234,447 + +0.9 1,234,465 + +1.3 1,234,465 + +1.6 1,234,465 + +1.0 1,234,466 - -3.2 1,234,466 - -0.8 1,234,466 - -0.3 1,234,466 - -0.7 1,234,512 - +0.5 1,234,514 + -0.1 1,234,584 - -1.3 1,234,584 - +2.3 1,234,723 + +0.6 1,234,735 - -1.1 1,234,757 - +0.4 1,234,778 + +1.4 1,234,802 - -0.1 1,234,802 - +0.2 1,235,040 + cysG LU632_RS06420 0.17 +2.2 1,235,127 + cysG LU632_RS06420 0.23 +1.4 1,235,128 - cysG LU632_RS06420 0.24 +0.1 1,235,139 + cysG LU632_RS06420 0.24 +1.4 1,235,139 + cysG LU632_RS06420 0.24 -0.1 1,235,140 - cysG LU632_RS06420 0.24 -0.8 1,235,140 - cysG LU632_RS06420 0.24 +0.4 1,235,140 - cysG LU632_RS06420 0.24 -1.6 1,235,140 - cysG LU632_RS06420 0.24 -1.1 1,235,210 + cysG LU632_RS06420 0.29 -0.0 1,235,302 - cysG LU632_RS06420 0.36 -1.7 1,235,344 - cysG LU632_RS06420 0.39 +0.7 1,235,344 - cysG LU632_RS06420 0.39 -1.8
Or see this region's nucleotide sequence