Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05045

Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05040 and LU632_RS05045 overlap by 4 nucleotidesLU632_RS05045 and LU632_RS05050 are separated by 127 nucleotides LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281 _RS05040 LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660 _RS05045 LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585 _RS05050 Position (kb) 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 980.388 kb on - strand, within LU632_RS05040at 980.388 kb on - strand, within LU632_RS05040at 980.427 kb on + strand, within LU632_RS05040at 980.428 kb on - strand, within LU632_RS05040at 980.475 kb on + strand, within LU632_RS05040at 980.475 kb on + strand, within LU632_RS05040at 980.475 kb on + strand, within LU632_RS05040at 980.475 kb on + strand, within LU632_RS05040at 980.476 kb on - strand, within LU632_RS05040at 980.481 kb on - strand, within LU632_RS05040at 980.520 kb on - strand, within LU632_RS05040at 980.726 kb on + strand, within LU632_RS05040at 980.732 kb on + strand, within LU632_RS05040at 980.732 kb on + strand, within LU632_RS05040at 980.751 kb on + strand, within LU632_RS05040at 980.767 kb on + strand, within LU632_RS05040at 980.767 kb on + strand, within LU632_RS05040at 980.768 kb on - strand, within LU632_RS05040at 980.768 kb on - strand, within LU632_RS05040at 980.768 kb on - strand, within LU632_RS05040at 980.792 kb on + strand, within LU632_RS05040at 980.823 kb on + strand, within LU632_RS05040at 980.823 kb on + strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.825 kb on + strand, within LU632_RS05040at 980.825 kb on + strand, within LU632_RS05040at 981.051 kb on + strandat 981.051 kb on + strandat 981.052 kb on - strandat 981.052 kb on - strandat 981.053 kb on + strandat 981.054 kb on - strandat 981.054 kb on - strandat 981.080 kb on + strandat 981.081 kb on - strandat 981.118 kb on - strandat 981.183 kb on + strandat 981.183 kb on + strandat 981.184 kb on - strandat 981.184 kb on - strandat 981.189 kb on - strandat 981.525 kb on + strand, within LU632_RS05045at 981.525 kb on + strand, within LU632_RS05045at 981.525 kb on + strand, within LU632_RS05045at 981.526 kb on - strand, within LU632_RS05045at 981.574 kb on + strand, within LU632_RS05045at 981.575 kb on - strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.594 kb on + strand, within LU632_RS05045at 981.594 kb on + strand, within LU632_RS05045at 981.595 kb on - strand, within LU632_RS05045at 981.649 kb on - strandat 981.649 kb on - strandat 981.649 kb on - strandat 981.650 kb on + strandat 981.650 kb on + strandat 981.651 kb on - strandat 981.651 kb on - strandat 981.651 kb on - strandat 981.659 kb on - strandat 981.796 kb on - strandat 981.807 kb on + strandat 981.807 kb on + strandat 981.808 kb on - strandat 981.968 kb on - strandat 982.003 kb on + strandat 982.318 kb on + strand, within LU632_RS05050

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
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980,388 - LU632_RS05040 0.69 +0.3
980,388 - LU632_RS05040 0.69 -1.3
980,427 + LU632_RS05040 0.70 -0.2
980,428 - LU632_RS05040 0.70 +1.3
980,475 + LU632_RS05040 0.72 +0.4
980,475 + LU632_RS05040 0.72 -0.1
980,475 + LU632_RS05040 0.72 -0.0
980,475 + LU632_RS05040 0.72 +0.3
980,476 - LU632_RS05040 0.72 -0.2
980,481 - LU632_RS05040 0.72 +1.0
980,520 - LU632_RS05040 0.73 +0.9
980,726 + LU632_RS05040 0.81 -0.5
980,732 + LU632_RS05040 0.81 -1.4
980,732 + LU632_RS05040 0.81 -1.5
980,751 + LU632_RS05040 0.81 +1.3
980,767 + LU632_RS05040 0.82 -0.3
980,767 + LU632_RS05040 0.82 +0.6
980,768 - LU632_RS05040 0.82 +1.3
980,768 - LU632_RS05040 0.82 -1.1
980,768 - LU632_RS05040 0.82 +0.9
980,792 + LU632_RS05040 0.83 -0.1
980,823 + LU632_RS05040 0.84 -0.3
980,823 + LU632_RS05040 0.84 -0.3
980,824 - LU632_RS05040 0.84 +0.7
980,824 - LU632_RS05040 0.84 +0.3
980,824 - LU632_RS05040 0.84 -0.4
980,825 + LU632_RS05040 0.84 -1.5
980,825 + LU632_RS05040 0.84 -0.1
981,051 + -0.5
981,051 + -0.5
981,052 - +0.9
981,052 - -0.6
981,053 + +1.0
981,054 - -0.4
981,054 - +0.3
981,080 + -0.6
981,081 - -2.8
981,118 - -0.8
981,183 + -1.9
981,183 + +1.2
981,184 - -0.2
981,184 - -0.5
981,189 - +2.0
981,525 + LU632_RS05045 0.64 -1.7
981,525 + LU632_RS05045 0.64 -2.5
981,525 + LU632_RS05045 0.64 -0.1
981,526 - LU632_RS05045 0.65 +0.3
981,574 + LU632_RS05045 0.77 +0.5
981,575 - LU632_RS05045 0.78 -2.5
981,592 + LU632_RS05045 0.82 +0.0
981,592 + LU632_RS05045 0.82 -0.7
981,592 + LU632_RS05045 0.82 -0.0
981,593 - LU632_RS05045 0.82 +0.7
981,593 - LU632_RS05045 0.82 -1.7
981,593 - LU632_RS05045 0.82 +1.1
981,594 + LU632_RS05045 0.83 +0.5
981,594 + LU632_RS05045 0.83 +3.0
981,595 - LU632_RS05045 0.83 -1.9
981,649 - -0.5
981,649 - -0.7
981,649 - -0.2
981,650 + +1.2
981,650 + -1.0
981,651 - +0.3
981,651 - +2.3
981,651 - +1.5
981,659 - -0.2
981,796 - +0.9
981,807 + +0.8
981,807 + +1.0
981,808 - +0.5
981,968 - -0.1
982,003 + +0.8
982,318 + LU632_RS05050 0.14 +0.6

Or see this region's nucleotide sequence