Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04685 and LU632_RS04690 are separated by 6 nucleotides LU632_RS04690 and LU632_RS04695 are separated by 161 nucleotides LU632_RS04695 and LU632_RS04700 are separated by 2 nucleotides
LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089
_RS04685
LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878
_RS04690
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 918.120 kb on + strand at 918.207 kb on + strand, within LU632_RS04690 at 918.231 kb on + strand, within LU632_RS04690 at 918.353 kb on + strand, within LU632_RS04690 at 918.354 kb on - strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.640 kb on - strand, within LU632_RS04690 at 918.889 kb on + strand at 918.890 kb on - strand at 918.890 kb on - strand at 918.911 kb on + strand at 918.931 kb on + strand at 918.932 kb on - strand at 918.932 kb on - strand at 918.975 kb on - strand at 918.975 kb on - strand at 918.977 kb on + strand at 919.039 kb on + strand at 919.054 kb on + strand at 919.073 kb on - strand at 919.105 kb on - strand at 919.105 kb on - strand at 919.151 kb on - strand at 919.152 kb on + strand at 919.152 kb on + strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.282 kb on - strand, within LU632_RS04695 at 919.387 kb on + strand, within LU632_RS04695 at 919.387 kb on + strand, within LU632_RS04695 at 919.483 kb on + strand, within LU632_RS04695 at 919.484 kb on - strand, within LU632_RS04695 at 919.505 kb on - strand, within LU632_RS04695 at 919.505 kb on - strand, within LU632_RS04695 at 919.512 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.801 kb on + strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.831 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.920 kb on + strand, within LU632_RS04695 at 919.932 kb on - strand, within LU632_RS04695 at 919.995 kb on + strand, within LU632_RS04695 at 920.019 kb on + strand, within LU632_RS04695 at 920.085 kb on + strand, within LU632_RS04695 at 920.086 kb on - strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.118 kb on + strand, within LU632_RS04695 at 920.119 kb on - strand, within LU632_RS04695 at 920.261 kb on - strand, within LU632_RS04695 at 920.344 kb on + strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.350 kb on - strand, within LU632_RS04695 at 920.366 kb on - strand, within LU632_RS04695 at 920.380 kb on + strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.416 kb on + strand, within LU632_RS04695 at 920.417 kb on - strand, within LU632_RS04695 at 920.460 kb on + strand, within LU632_RS04695 at 920.470 kb on + strand, within LU632_RS04695 at 920.474 kb on - strand at 920.478 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.520 kb on - strand at 920.604 kb on + strand at 920.604 kb on + strand at 920.605 kb on - strand at 920.605 kb on - strand at 920.631 kb on - strand at 920.661 kb on + strand at 920.663 kb on + strand at 920.664 kb on - strand at 920.681 kb on + strand at 920.802 kb on + strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.826 kb on + strand, within LU632_RS04700 at 920.913 kb on - strand, within LU632_RS04700 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 918,120 + +0.3 918,207 + LU632_RS04690 0.14 +1.0 918,231 + LU632_RS04690 0.17 +0.4 918,353 + LU632_RS04690 0.33 -1.6 918,354 - LU632_RS04690 0.33 +0.8 918,508 + LU632_RS04690 0.53 -0.1 918,508 + LU632_RS04690 0.53 +0.3 918,508 + LU632_RS04690 0.53 -2.5 918,508 + LU632_RS04690 0.53 -0.6 918,509 - LU632_RS04690 0.53 +1.3 918,509 - LU632_RS04690 0.53 -1.1 918,640 - LU632_RS04690 0.69 +0.7 918,889 + +1.7 918,890 - +1.3 918,890 - -0.0 918,911 + +0.8 918,931 + -0.9 918,932 - +1.8 918,932 - +2.3 918,975 - +0.2 918,975 - +1.0 918,977 + -0.7 919,039 + +0.4 919,054 + +1.1 919,073 - -0.7 919,105 - +0.1 919,105 - +1.7 919,151 - -0.6 919,152 + +2.4 919,152 + +0.5 919,153 - -2.9 919,153 - -0.1 919,153 - +0.0 919,153 - +0.1 919,153 - -1.0 919,282 - LU632_RS04695 0.15 +0.4 919,387 + LU632_RS04695 0.22 +0.0 919,387 + LU632_RS04695 0.22 -0.1 919,483 + LU632_RS04695 0.28 -0.1 919,484 - LU632_RS04695 0.28 -1.0 919,505 - LU632_RS04695 0.29 +0.3 919,505 - LU632_RS04695 0.29 -0.1 919,512 + LU632_RS04695 0.30 +0.1 919,659 + LU632_RS04695 0.39 -0.3 919,659 + LU632_RS04695 0.39 -1.4 919,659 + LU632_RS04695 0.39 +0.2 919,798 - LU632_RS04695 0.48 +0.6 919,798 - LU632_RS04695 0.48 +0.4 919,798 - LU632_RS04695 0.48 -0.2 919,798 - LU632_RS04695 0.48 -1.4 919,801 + LU632_RS04695 0.48 -1.3 919,802 - LU632_RS04695 0.48 -0.6 919,802 - LU632_RS04695 0.48 -0.9 919,831 + LU632_RS04695 0.50 +0.3 919,890 + LU632_RS04695 0.53 +0.1 919,890 + LU632_RS04695 0.53 -2.8 919,920 + LU632_RS04695 0.55 +0.1 919,932 - LU632_RS04695 0.56 -3.3 919,995 + LU632_RS04695 0.60 +0.6 920,019 + LU632_RS04695 0.61 -0.1 920,085 + LU632_RS04695 0.66 +0.2 920,086 - LU632_RS04695 0.66 +0.5 920,114 + LU632_RS04695 0.67 -0.9 920,114 + LU632_RS04695 0.67 +0.7 920,114 + LU632_RS04695 0.67 -1.6 920,114 + LU632_RS04695 0.67 -0.1 920,114 + LU632_RS04695 0.67 +1.3 920,114 + LU632_RS04695 0.67 -0.6 920,115 - LU632_RS04695 0.67 +1.9 920,115 - LU632_RS04695 0.67 -0.9 920,115 - LU632_RS04695 0.67 -0.4 920,115 - LU632_RS04695 0.67 -0.3 920,118 + LU632_RS04695 0.68 -1.1 920,119 - LU632_RS04695 0.68 +1.9 920,261 - LU632_RS04695 0.77 -0.2 920,344 + LU632_RS04695 0.82 -1.6 920,345 - LU632_RS04695 0.82 -2.3 920,345 - LU632_RS04695 0.82 +1.6 920,350 - LU632_RS04695 0.82 +2.0 920,366 - LU632_RS04695 0.83 -1.7 920,380 + LU632_RS04695 0.84 -3.3 920,381 - LU632_RS04695 0.84 +0.8 920,381 - LU632_RS04695 0.84 -1.1 920,381 - LU632_RS04695 0.84 -1.1 920,416 + LU632_RS04695 0.86 +0.0 920,417 - LU632_RS04695 0.86 -0.3 920,460 + LU632_RS04695 0.89 +4.2 920,470 + LU632_RS04695 0.90 +1.0 920,474 - +0.5 920,478 + -1.9 920,519 + -2.5 920,519 + -1.0 920,519 + -1.7 920,519 + +1.4 920,520 - +0.3 920,604 + +0.9 920,604 + +2.2 920,605 - +0.0 920,605 - -1.6 920,631 - +0.2 920,661 + +1.0 920,663 + +0.1 920,664 - -0.7 920,681 + +1.4 920,802 + LU632_RS04700 0.16 -0.6 920,803 - LU632_RS04700 0.16 -1.4 920,803 - LU632_RS04700 0.16 -0.5 920,803 - LU632_RS04700 0.16 +0.3 920,826 + LU632_RS04700 0.19 +1.4 920,913 - LU632_RS04700 0.27 -0.1 920,925 - LU632_RS04700 0.28 -0.1 920,974 - LU632_RS04700 0.33 -2.5 920,974 - LU632_RS04700 0.33 +0.2 921,022 + LU632_RS04700 0.38 +1.5 921,023 - LU632_RS04700 0.38 +2.0 921,023 - LU632_RS04700 0.38 -3.2 921,105 + LU632_RS04700 0.46 +0.4 921,109 - LU632_RS04700 0.46 -0.9 921,109 - LU632_RS04700 0.46 -1.6 921,195 - LU632_RS04700 0.54 -0.4 921,213 + LU632_RS04700 0.56 +1.4 921,213 + LU632_RS04700 0.56 +2.8 921,213 + LU632_RS04700 0.56 -0.2 921,263 - LU632_RS04700 0.61 -1.0 921,376 + LU632_RS04700 0.72 -0.4 921,376 + LU632_RS04700 0.72 -0.2 921,376 + LU632_RS04700 0.72 -0.2 921,380 + LU632_RS04700 0.72 -0.6 921,380 + LU632_RS04700 0.72 -0.3 921,381 - LU632_RS04700 0.72 -0.0 921,381 - LU632_RS04700 0.72 +0.7
Or see this region's nucleotide sequence