Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and LU632_RS02490 are separated by 140 nucleotides LU632_RS02490 and LU632_RS02495 are separated by 96 nucleotides LU632_RS02495 and LU632_RS02500 are separated by 245 nucleotides
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
LU632_RS02490: LU632_RS02490 - DUF1328 domain-containing protein, at 494,860 to 495,021
_RS02490
LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326
_RS02495
LU632_RS02500: LU632_RS02500 - DDE-type integrase/transposase/recombinase, at 496,572 to 497,194
_RS02500
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY at 494.212 kb on + strand, within osmY at 494.329 kb on + strand, within osmY at 494.330 kb on - strand, within osmY at 494.342 kb on - strand, within osmY at 494.497 kb on - strand, within osmY at 494.542 kb on + strand, within osmY at 494.542 kb on + strand, within osmY at 494.543 kb on - strand, within osmY at 494.543 kb on - strand, within osmY at 494.575 kb on + strand, within osmY at 494.702 kb on - strand at 494.772 kb on - strand at 494.772 kb on - strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.787 kb on - strand at 494.860 kb on - strand at 494.934 kb on + strand, within LU632_RS02490 at 494.976 kb on + strand, within LU632_RS02490 at 494.977 kb on - strand, within LU632_RS02490 at 495.350 kb on + strand, within LU632_RS02495 at 495.350 kb on + strand, within LU632_RS02495 at 496.038 kb on - strand, within LU632_RS02495 at 496.352 kb on + strand at 496.352 kb on + strand at 496.433 kb on + strand at 496.434 kb on - strand at 496.434 kb on - strand at 496.435 kb on + strand at 496.435 kb on + strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.511 kb on + strand at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.709 kb on - strand, within LU632_RS02500 at 496.979 kb on - strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.053 kb on - strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.085 kb on + strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.161 kb on - strand at 497.177 kb on + strand at 497.191 kb on + strand at 497.222 kb on + strand at 497.223 kb on - strand at 497.253 kb on - strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 494,134 + -0.1 494,135 - -0.4 494,142 + +0.4 494,143 - +1.4 494,171 + osmY LU632_RS02485 0.11 +0.4 494,188 + osmY LU632_RS02485 0.13 +0.4 494,212 + osmY LU632_RS02485 0.17 -1.0 494,329 + osmY LU632_RS02485 0.36 -2.5 494,330 - osmY LU632_RS02485 0.37 -0.7 494,342 - osmY LU632_RS02485 0.39 -0.2 494,497 - osmY LU632_RS02485 0.64 -2.0 494,542 + osmY LU632_RS02485 0.71 -2.4 494,542 + osmY LU632_RS02485 0.71 -0.1 494,543 - osmY LU632_RS02485 0.71 +0.2 494,543 - osmY LU632_RS02485 0.71 -0.2 494,575 + osmY LU632_RS02485 0.76 -0.3 494,702 - -0.1 494,772 - +1.0 494,772 - +0.3 494,781 + -0.6 494,782 - -0.1 494,782 - -0.1 494,787 - +1.0 494,860 - -0.0 494,934 + LU632_RS02490 0.46 -1.0 494,976 + LU632_RS02490 0.72 +1.1 494,977 - LU632_RS02490 0.72 +0.2 495,350 + LU632_RS02495 0.19 -0.5 495,350 + LU632_RS02495 0.19 +0.3 496,038 - LU632_RS02495 0.76 +2.2 496,352 + +0.3 496,352 + -1.8 496,433 + -0.3 496,434 - +1.6 496,434 - +0.6 496,435 + +1.6 496,435 + -0.4 496,436 - -1.9 496,436 - -1.1 496,436 - -0.2 496,436 - +1.8 496,511 + -0.4 496,689 + LU632_RS02500 0.19 -0.3 496,689 + LU632_RS02500 0.19 -0.4 496,689 + LU632_RS02500 0.19 -0.1 496,689 + LU632_RS02500 0.19 +0.1 496,689 + LU632_RS02500 0.19 +0.1 496,690 - LU632_RS02500 0.19 +0.6 496,690 - LU632_RS02500 0.19 +1.6 496,690 - LU632_RS02500 0.19 -1.5 496,690 - LU632_RS02500 0.19 +0.2 496,690 - LU632_RS02500 0.19 -0.1 496,709 - LU632_RS02500 0.22 +0.9 496,979 - LU632_RS02500 0.65 +0.3 497,052 + LU632_RS02500 0.77 +1.6 497,052 + LU632_RS02500 0.77 -0.7 497,052 + LU632_RS02500 0.77 +3.2 497,053 - LU632_RS02500 0.77 -0.9 497,083 + LU632_RS02500 0.82 +0.2 497,083 + LU632_RS02500 0.82 +2.7 497,083 + LU632_RS02500 0.82 +1.6 497,084 - LU632_RS02500 0.82 +0.2 497,084 - LU632_RS02500 0.82 -0.2 497,084 - LU632_RS02500 0.82 +0.4 497,085 + LU632_RS02500 0.82 +0.2 497,086 - LU632_RS02500 0.83 +0.9 497,086 - LU632_RS02500 0.83 -0.9 497,086 - LU632_RS02500 0.83 +1.1 497,160 + +0.9 497,160 + +0.6 497,160 + +0.6 497,160 + +0.4 497,161 - -0.5 497,177 + -0.4 497,191 + -2.7 497,222 + -0.4 497,223 - -0.2 497,253 - -0.6 497,299 + -0.7 497,299 + +0.7 497,299 + -0.4 497,300 - -0.7
Or see this region's nucleotide sequence