Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01130 and lpcA are separated by 213 nucleotides lpcA and LU632_RS01140 are separated by 43 nucleotides LU632_RS01140 and dpaA overlap by 30 nucleotides dpaA and dinB are separated by 235 nucleotides
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
LU632_RS01135: lpcA - D-sedoheptulose 7-phosphate isomerase, at 241,854 to 242,432
lpcA
LU632_RS01140: LU632_RS01140 - class II glutamine amidotransferase, at 242,476 to 243,243
_RS01140
LU632_RS01145: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 243,214 to 243,957
dpaA
LU632_RS01150: dinB - DNA polymerase IV, at 244,193 to 245,248
dinB
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 241.573 kb on - strand at 241.589 kb on - strand at 241.640 kb on + strand at 241.641 kb on - strand at 241.641 kb on - strand at 241.720 kb on + strand at 241.753 kb on - strand at 242.163 kb on + strand, within lpcA at 242.379 kb on - strand at 242.430 kb on + strand at 242.469 kb on + strand at 242.469 kb on + strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.476 kb on - strand at 242.622 kb on + strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.719 kb on - strand, within LU632_RS01140 at 242.745 kb on + strand, within LU632_RS01140 at 242.768 kb on + strand, within LU632_RS01140 at 242.769 kb on - strand, within LU632_RS01140 at 242.778 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.789 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.274 kb on - strand at 243.290 kb on - strand, within dpaA at 243.294 kb on - strand, within dpaA at 243.492 kb on - strand, within dpaA at 243.492 kb on - strand, within dpaA at 243.495 kb on + strand, within dpaA at 243.495 kb on + strand, within dpaA at 243.496 kb on - strand, within dpaA at 243.547 kb on - strand, within dpaA at 243.564 kb on - strand, within dpaA at 243.601 kb on - strand, within dpaA at 243.907 kb on + strand at 243.975 kb on + strand at 243.975 kb on + strand at 243.987 kb on + strand at 243.988 kb on - strand at 243.988 kb on - strand at 243.988 kb on - strand at 244.034 kb on - strand at 244.051 kb on - strand at 244.198 kb on + strand at 244.210 kb on + strand at 244.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 241,573 - +2.0 241,589 - -0.2 241,640 + +0.4 241,641 - -2.8 241,641 - -1.2 241,720 + +1.0 241,753 - -1.2 242,163 + lpcA LU632_RS01135 0.53 -2.1 242,379 - -1.7 242,430 + +0.2 242,469 + -1.7 242,469 + -2.4 242,470 - -1.0 242,470 - +0.3 242,470 - -3.1 242,476 - +1.2 242,622 + LU632_RS01140 0.19 -0.1 242,623 - LU632_RS01140 0.19 +1.2 242,623 - LU632_RS01140 0.19 -0.3 242,623 - LU632_RS01140 0.19 -2.1 242,623 - LU632_RS01140 0.19 +0.0 242,719 - LU632_RS01140 0.32 +1.6 242,745 + LU632_RS01140 0.35 +0.6 242,768 + LU632_RS01140 0.38 -1.4 242,769 - LU632_RS01140 0.38 -0.0 242,778 + LU632_RS01140 0.39 -0.5 242,788 + LU632_RS01140 0.41 +0.5 242,788 + LU632_RS01140 0.41 -0.1 242,789 - LU632_RS01140 0.41 +0.1 242,808 - LU632_RS01140 0.43 +1.0 242,808 - LU632_RS01140 0.43 +1.0 242,994 + LU632_RS01140 0.67 -0.3 242,994 + LU632_RS01140 0.67 +0.3 242,994 + LU632_RS01140 0.67 -0.3 242,995 - LU632_RS01140 0.68 -1.2 242,995 - LU632_RS01140 0.68 +0.6 243,022 - LU632_RS01140 0.71 -0.0 243,022 - LU632_RS01140 0.71 -0.7 243,274 - -1.4 243,290 - dpaA LU632_RS01145 0.10 -0.5 243,294 - dpaA LU632_RS01145 0.11 -1.7 243,492 - dpaA LU632_RS01145 0.37 -2.0 243,492 - dpaA LU632_RS01145 0.37 -1.7 243,495 + dpaA LU632_RS01145 0.38 +3.1 243,495 + dpaA LU632_RS01145 0.38 -3.0 243,496 - dpaA LU632_RS01145 0.38 +1.0 243,547 - dpaA LU632_RS01145 0.45 -1.7 243,564 - dpaA LU632_RS01145 0.47 -1.2 243,601 - dpaA LU632_RS01145 0.52 +0.4 243,907 + +0.6 243,975 + -0.6 243,975 + -0.8 243,987 + +0.3 243,988 - -1.4 243,988 - +1.1 243,988 - -0.6 244,034 - +0.6 244,051 - +0.1 244,198 + -0.4 244,210 + -0.5 244,210 + -2.7
Or see this region's nucleotide sequence