Experiment: Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dppB and dppC are separated by 10 nucleotides dppC and dppD are separated by 9 nucleotides dppD and LU632_RS00285 overlap by 29 nucleotides
LU632_RS00270: dppB - dipeptide ABC transporter permease DppB, at 54,528 to 55,547
dppB
LU632_RS00275: dppC - dipeptide ABC transporter permease DppC, at 55,558 to 56,460
dppC
LU632_RS00280: dppD - dipeptide ABC transporter ATP-binding protein, at 56,470 to 57,456
dppD
LU632_RS00285: LU632_RS00285 - ABC transporter ATP-binding protein, at 57,428 to 58,447
_RS00285
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 55.479 kb on - strand at 55.509 kb on + strand at 55.630 kb on + strand at 55.631 kb on - strand at 55.644 kb on + strand at 55.670 kb on - strand, within dppC at 55.751 kb on + strand, within dppC at 55.795 kb on - strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.844 kb on - strand, within dppC at 56.001 kb on - strand, within dppC at 56.040 kb on + strand, within dppC at 56.041 kb on - strand, within dppC at 56.041 kb on - strand, within dppC at 56.083 kb on + strand, within dppC at 56.083 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.427 kb on - strand at 56.480 kb on + strand at 56.551 kb on + strand at 56.638 kb on - strand, within dppD at 56.645 kb on - strand, within dppD at 56.653 kb on - strand, within dppD at 56.786 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.047 kb on + strand, within dppD at 57.048 kb on - strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.066 kb on - strand, within dppD at 57.066 kb on - strand, within dppD at 57.151 kb on + strand, within dppD at 57.151 kb on + strand, within dppD at 57.152 kb on - strand, within dppD at 57.152 kb on - strand, within dppD at 57.214 kb on + strand, within dppD at 57.216 kb on + strand, within dppD at 57.380 kb on + strand at 57.380 kb on + strand at 57.547 kb on - strand, within LU632_RS00285 at 57.684 kb on - strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.094 kb on - strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.327 kb on + strand, within LU632_RS00285 at 58.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) remove 55,479 - -0.4 55,509 + +1.6 55,630 + -1.3 55,631 - +1.3 55,644 + +0.4 55,670 - dppC LU632_RS00275 0.12 +0.9 55,751 + dppC LU632_RS00275 0.21 -1.6 55,795 - dppC LU632_RS00275 0.26 -0.9 55,843 + dppC LU632_RS00275 0.32 +1.1 55,843 + dppC LU632_RS00275 0.32 -0.2 55,843 + dppC LU632_RS00275 0.32 -0.8 55,843 + dppC LU632_RS00275 0.32 +0.6 55,844 - dppC LU632_RS00275 0.32 +2.3 56,001 - dppC LU632_RS00275 0.49 +1.0 56,040 + dppC LU632_RS00275 0.53 -0.6 56,041 - dppC LU632_RS00275 0.53 -0.7 56,041 - dppC LU632_RS00275 0.53 -0.2 56,083 + dppC LU632_RS00275 0.58 +1.0 56,083 + dppC LU632_RS00275 0.58 +1.8 56,131 + dppC LU632_RS00275 0.63 -1.2 56,131 + dppC LU632_RS00275 0.63 -3.2 56,427 - +0.4 56,480 + -0.2 56,551 + +3.3 56,638 - dppD LU632_RS00280 0.17 -0.5 56,645 - dppD LU632_RS00280 0.18 -1.4 56,653 - dppD LU632_RS00280 0.19 +0.1 56,786 - dppD LU632_RS00280 0.32 +0.7 57,046 - dppD LU632_RS00280 0.58 +0.0 57,046 - dppD LU632_RS00280 0.58 -1.7 57,047 + dppD LU632_RS00280 0.58 +0.0 57,048 - dppD LU632_RS00280 0.59 +1.3 57,065 + dppD LU632_RS00280 0.60 +1.0 57,065 + dppD LU632_RS00280 0.60 +0.2 57,065 + dppD LU632_RS00280 0.60 +0.9 57,066 - dppD LU632_RS00280 0.60 +1.9 57,066 - dppD LU632_RS00280 0.60 +0.9 57,151 + dppD LU632_RS00280 0.69 +1.1 57,151 + dppD LU632_RS00280 0.69 -0.1 57,152 - dppD LU632_RS00280 0.69 -0.1 57,152 - dppD LU632_RS00280 0.69 +0.6 57,214 + dppD LU632_RS00280 0.75 +0.8 57,216 + dppD LU632_RS00280 0.76 -0.4 57,380 + -0.6 57,380 + +0.8 57,547 - LU632_RS00285 0.12 -3.0 57,684 - LU632_RS00285 0.25 -1.6 58,085 + LU632_RS00285 0.64 -1.0 58,085 + LU632_RS00285 0.64 -1.2 58,094 - LU632_RS00285 0.65 -0.7 58,148 + LU632_RS00285 0.71 +0.9 58,148 + LU632_RS00285 0.71 -0.1 58,148 + LU632_RS00285 0.71 -1.4 58,149 - LU632_RS00285 0.71 +0.6 58,149 - LU632_RS00285 0.71 -1.1 58,149 - LU632_RS00285 0.71 -1.0 58,149 - LU632_RS00285 0.71 -0.0 58,327 + LU632_RS00285 0.88 -0.1 58,388 + +3.9
Or see this region's nucleotide sequence