Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25675 and LU632_RS25680 are separated by 32 nucleotides LU632_RS25680 and LU632_RS25685 are separated by 110 nucleotides LU632_RS25685 and LU632_RS25690 overlap by 4 nucleotides LU632_RS25690 and traJ overlap by 4 nucleotides
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
LU632_RS25680: LU632_RS25680 - hypothetical protein, at 65,632 to 65,835
_RS25680
LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398
_RS25685
LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183
_RS25690
LU632_RS25695: traJ - plasmid transfer ATPase TraJ, at 67,180 to 68,337
traJ
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 65.462 kb on - strand at 65.462 kb on - strand at 65.472 kb on - strand at 65.485 kb on + strand at 65.486 kb on - strand at 65.486 kb on - strand at 65.515 kb on - strand at 65.533 kb on + strand at 65.561 kb on + strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.575 kb on + strand at 65.623 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.734 kb on - strand, within LU632_RS25680 at 65.754 kb on - strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.856 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.897 kb on - strand at 65.897 kb on - strand at 65.928 kb on - strand at 65.959 kb on - strand at 66.014 kb on + strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.018 kb on - strand, within LU632_RS25685 at 66.082 kb on - strand, within LU632_RS25685 at 66.215 kb on + strand, within LU632_RS25685 at 66.225 kb on + strand, within LU632_RS25685 at 66.226 kb on - strand, within LU632_RS25685 at 66.313 kb on + strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.361 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.426 kb on + strand at 66.427 kb on - strand at 66.472 kb on + strand at 66.472 kb on + strand at 66.473 kb on - strand at 66.473 kb on - strand at 66.506 kb on + strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.677 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.787 kb on + strand, within LU632_RS25690 at 67.014 kb on + strand, within LU632_RS25690 at 67.111 kb on + strand at 67.112 kb on - strand at 67.147 kb on + strand at 67.189 kb on - strand at 67.220 kb on + strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.287 kb on - strand at 67.326 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.462 kb on - strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.512 kb on + strand, within traJ at 67.705 kb on - strand, within traJ at 67.708 kb on + strand, within traJ at 67.708 kb on + strand, within traJ at 67.709 kb on - strand, within traJ at 67.709 kb on - strand, within traJ at 67.714 kb on + strand, within traJ at 67.715 kb on - strand, within traJ at 67.715 kb on - strand, within traJ at 67.715 kb on - strand, within traJ at 67.765 kb on - strand, within traJ at 67.767 kb on - strand, within traJ at 67.995 kb on + strand, within traJ at 67.996 kb on - strand, within traJ at 68.071 kb on + strand, within traJ at 68.071 kb on + strand, within traJ at 68.071 kb on + strand, within traJ at 68.072 kb on - strand, within traJ at 68.072 kb on - strand, within traJ at 68.131 kb on + strand, within traJ at 68.132 kb on - strand, within traJ at 68.138 kb on + strand, within traJ
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 65,462 - +0.6 65,462 - -0.7 65,472 - -1.7 65,485 + +2.1 65,486 - +0.4 65,486 - +2.5 65,515 - +0.1 65,533 + -2.4 65,561 + -3.4 65,562 - -1.9 65,562 - -2.0 65,562 - +0.9 65,575 + -1.9 65,623 + -1.5 65,627 + +4.2 65,627 + -1.2 65,627 + -1.5 65,673 + LU632_RS25680 0.20 -0.7 65,673 + LU632_RS25680 0.20 -0.5 65,673 + LU632_RS25680 0.20 +1.0 65,673 + LU632_RS25680 0.20 -0.4 65,673 + LU632_RS25680 0.20 -2.5 65,673 + LU632_RS25680 0.20 -0.1 65,674 - LU632_RS25680 0.21 -0.4 65,674 - LU632_RS25680 0.21 -1.4 65,674 - LU632_RS25680 0.21 -0.1 65,674 - LU632_RS25680 0.21 -2.0 65,674 - LU632_RS25680 0.21 -1.0 65,729 + LU632_RS25680 0.48 -0.1 65,729 + LU632_RS25680 0.48 -1.7 65,730 - LU632_RS25680 0.48 -2.9 65,730 - LU632_RS25680 0.48 -2.2 65,733 + LU632_RS25680 0.50 +0.4 65,733 + LU632_RS25680 0.50 +0.6 65,734 - LU632_RS25680 0.50 +1.3 65,754 - LU632_RS25680 0.60 -1.4 65,757 + LU632_RS25680 0.61 -0.1 65,757 + LU632_RS25680 0.61 -1.2 65,856 + +1.4 65,896 + -2.1 65,896 + -0.1 65,896 + -1.9 65,896 + +0.2 65,896 + -0.2 65,896 + +1.9 65,896 + +1.1 65,896 + +0.5 65,896 + -0.7 65,896 + -0.7 65,897 - +1.8 65,897 - -2.1 65,928 - +1.2 65,959 - -0.9 66,014 + LU632_RS25685 0.15 -1.5 66,015 - LU632_RS25685 0.15 -1.1 66,015 - LU632_RS25685 0.15 -1.1 66,015 - LU632_RS25685 0.15 -0.9 66,015 - LU632_RS25685 0.15 +1.8 66,018 - LU632_RS25685 0.16 +3.0 66,082 - LU632_RS25685 0.30 -2.9 66,215 + LU632_RS25685 0.59 +2.3 66,225 + LU632_RS25685 0.62 -2.4 66,226 - LU632_RS25685 0.62 +0.5 66,313 + LU632_RS25685 0.81 +0.8 66,314 - LU632_RS25685 0.81 -3.5 66,314 - LU632_RS25685 0.81 -0.8 66,314 - LU632_RS25685 0.81 +0.8 66,314 - LU632_RS25685 0.81 -1.5 66,361 - -0.2 66,409 - +0.1 66,409 - -2.4 66,409 - +0.1 66,409 - -3.5 66,426 + -1.5 66,427 - -2.5 66,472 + +0.9 66,472 + -1.9 66,473 - -2.2 66,473 - -2.2 66,506 + LU632_RS25690 0.14 -0.3 66,507 - LU632_RS25690 0.14 -2.4 66,507 - LU632_RS25690 0.14 -4.4 66,645 - LU632_RS25690 0.32 -0.7 66,645 - LU632_RS25690 0.32 +1.1 66,645 - LU632_RS25690 0.32 +2.1 66,677 + LU632_RS25690 0.36 -2.4 66,755 + LU632_RS25690 0.46 +1.1 66,755 + LU632_RS25690 0.46 -0.8 66,755 + LU632_RS25690 0.46 +0.5 66,755 + LU632_RS25690 0.46 +1.2 66,755 + LU632_RS25690 0.46 +0.6 66,755 + LU632_RS25690 0.46 +1.2 66,756 - LU632_RS25690 0.46 +0.1 66,756 - LU632_RS25690 0.46 +0.6 66,756 - LU632_RS25690 0.46 -0.1 66,756 - LU632_RS25690 0.46 +0.1 66,756 - LU632_RS25690 0.46 +1.3 66,756 - LU632_RS25690 0.46 +1.2 66,757 + LU632_RS25690 0.46 +0.1 66,757 + LU632_RS25690 0.46 -2.5 66,757 + LU632_RS25690 0.46 -1.4 66,757 + LU632_RS25690 0.46 -1.7 66,757 + LU632_RS25690 0.46 -0.2 66,757 + LU632_RS25690 0.46 -1.7 66,757 + LU632_RS25690 0.46 -0.3 66,757 + LU632_RS25690 0.46 -3.6 66,758 - LU632_RS25690 0.46 +1.5 66,758 - LU632_RS25690 0.46 +1.0 66,758 - LU632_RS25690 0.46 +0.6 66,758 - LU632_RS25690 0.46 +2.1 66,758 - LU632_RS25690 0.46 -2.4 66,760 + LU632_RS25690 0.46 -0.1 66,760 + LU632_RS25690 0.46 +3.1 66,760 + LU632_RS25690 0.46 -3.3 66,760 + LU632_RS25690 0.46 -2.4 66,760 + LU632_RS25690 0.46 -0.6 66,760 + LU632_RS25690 0.46 -0.9 66,760 + LU632_RS25690 0.46 -0.5 66,761 - LU632_RS25690 0.46 -2.5 66,761 - LU632_RS25690 0.46 +0.2 66,761 - LU632_RS25690 0.46 -2.5 66,761 - LU632_RS25690 0.46 -1.5 66,761 - LU632_RS25690 0.46 -0.1 66,761 - LU632_RS25690 0.46 -0.0 66,761 - LU632_RS25690 0.46 -1.5 66,761 - LU632_RS25690 0.46 -0.5 66,761 - LU632_RS25690 0.46 +0.2 66,761 - LU632_RS25690 0.46 -0.3 66,761 - LU632_RS25690 0.46 -1.5 66,761 - LU632_RS25690 0.46 +1.3 66,761 - LU632_RS25690 0.46 +1.4 66,761 - LU632_RS25690 0.46 -0.8 66,762 + LU632_RS25690 0.47 +3.4 66,762 + LU632_RS25690 0.47 +0.1 66,762 + LU632_RS25690 0.47 -1.1 66,763 - LU632_RS25690 0.47 +0.3 66,763 - LU632_RS25690 0.47 -2.2 66,763 - LU632_RS25690 0.47 -2.7 66,763 - LU632_RS25690 0.47 +0.8 66,787 + LU632_RS25690 0.50 -2.4 67,014 + LU632_RS25690 0.78 +0.1 67,111 + -2.7 67,112 - -1.9 67,147 + -0.1 67,189 - -0.4 67,220 + -1.8 67,221 - -2.7 67,221 - -2.6 67,221 - -2.2 67,287 - +0.3 67,326 + traJ LU632_RS25695 0.13 +0.7 67,461 + traJ LU632_RS25695 0.24 +1.2 67,461 + traJ LU632_RS25695 0.24 -1.1 67,461 + traJ LU632_RS25695 0.24 +1.3 67,462 - traJ LU632_RS25695 0.24 -1.9 67,465 + traJ LU632_RS25695 0.25 +0.6 67,465 + traJ LU632_RS25695 0.25 +0.9 67,465 + traJ LU632_RS25695 0.25 -0.6 67,465 + traJ LU632_RS25695 0.25 -2.2 67,465 + traJ LU632_RS25695 0.25 -2.5 67,466 - traJ LU632_RS25695 0.25 +0.9 67,466 - traJ LU632_RS25695 0.25 +1.9 67,466 - traJ LU632_RS25695 0.25 +0.4 67,466 - traJ LU632_RS25695 0.25 -1.5 67,512 + traJ LU632_RS25695 0.29 -3.4 67,705 - traJ LU632_RS25695 0.45 -0.5 67,708 + traJ LU632_RS25695 0.46 +4.3 67,708 + traJ LU632_RS25695 0.46 -1.8 67,709 - traJ LU632_RS25695 0.46 -1.0 67,709 - traJ LU632_RS25695 0.46 +3.1 67,714 + traJ LU632_RS25695 0.46 -1.2 67,715 - traJ LU632_RS25695 0.46 +0.0 67,715 - traJ LU632_RS25695 0.46 -0.4 67,715 - traJ LU632_RS25695 0.46 +0.1 67,765 - traJ LU632_RS25695 0.51 -0.5 67,767 - traJ LU632_RS25695 0.51 -0.3 67,995 + traJ LU632_RS25695 0.70 -1.9 67,996 - traJ LU632_RS25695 0.70 +0.6 68,071 + traJ LU632_RS25695 0.77 -1.7 68,071 + traJ LU632_RS25695 0.77 +2.2 68,071 + traJ LU632_RS25695 0.77 +0.8 68,072 - traJ LU632_RS25695 0.77 +1.1 68,072 - traJ LU632_RS25695 0.77 +1.1 68,131 + traJ LU632_RS25695 0.82 -0.9 68,132 - traJ LU632_RS25695 0.82 -2.2 68,138 + traJ LU632_RS25695 0.83 -0.5
Or see this region's nucleotide sequence