Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25335 and LU632_RS25340 are separated by 7 nucleotides LU632_RS25340 and LU632_RS25345 are separated by 100 nucleotides LU632_RS25345 and LU632_RS25350 are separated by 15 nucleotides
LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604
_RS25335
LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055
_RS25340
LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776
_RS25345
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
Position (kb) 3
4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 2.643 kb on + strand, within LU632_RS25335 at 2.643 kb on + strand, within LU632_RS25335 at 2.667 kb on - strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.700 kb on - strand, within LU632_RS25335 at 2.807 kb on + strand, within LU632_RS25335 at 2.807 kb on + strand, within LU632_RS25335 at 2.808 kb on - strand, within LU632_RS25335 at 2.808 kb on - strand, within LU632_RS25335 at 2.830 kb on + strand, within LU632_RS25335 at 2.830 kb on + strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.873 kb on + strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 3.078 kb on - strand, within LU632_RS25335 at 3.078 kb on - strand, within LU632_RS25335 at 3.080 kb on - strand, within LU632_RS25335 at 3.276 kb on + strand, within LU632_RS25335 at 3.617 kb on + strand at 3.708 kb on - strand, within LU632_RS25340 at 3.721 kb on - strand, within LU632_RS25340 at 3.804 kb on - strand, within LU632_RS25340 at 3.906 kb on + strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.940 kb on - strand, within LU632_RS25340 at 4.023 kb on - strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.135 kb on + strand at 4.136 kb on - strand at 4.136 kb on - strand at 4.200 kb on + strand at 4.300 kb on + strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.489 kb on + strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.615 kb on - strand, within LU632_RS25345 at 4.692 kb on + strand, within LU632_RS25345 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 2,643 + LU632_RS25335 0.66 -3.1 2,643 + LU632_RS25335 0.66 +0.9 2,667 - LU632_RS25335 0.67 +1.1 2,699 + LU632_RS25335 0.68 +0.9 2,699 + LU632_RS25335 0.68 +2.2 2,699 + LU632_RS25335 0.68 -1.9 2,700 - LU632_RS25335 0.68 -3.5 2,807 + LU632_RS25335 0.72 +0.3 2,807 + LU632_RS25335 0.72 -0.3 2,808 - LU632_RS25335 0.72 +0.2 2,808 - LU632_RS25335 0.72 +1.5 2,830 + LU632_RS25335 0.73 +1.0 2,830 + LU632_RS25335 0.73 +1.1 2,831 - LU632_RS25335 0.73 -1.9 2,831 - LU632_RS25335 0.73 -2.2 2,831 - LU632_RS25335 0.73 -0.1 2,873 + LU632_RS25335 0.74 +2.7 2,982 - LU632_RS25335 0.78 -2.7 2,982 - LU632_RS25335 0.78 +0.6 2,982 - LU632_RS25335 0.78 +0.1 2,982 - LU632_RS25335 0.78 -1.6 3,078 - LU632_RS25335 0.81 -0.4 3,078 - LU632_RS25335 0.81 -1.2 3,080 - LU632_RS25335 0.81 -0.7 3,276 + LU632_RS25335 0.88 +0.5 3,617 + +1.5 3,708 - LU632_RS25340 0.22 -1.4 3,721 - LU632_RS25340 0.25 -2.2 3,804 - LU632_RS25340 0.43 +2.0 3,906 + LU632_RS25340 0.66 -1.3 3,907 - LU632_RS25340 0.66 +0.8 3,907 - LU632_RS25340 0.66 +1.8 3,940 - LU632_RS25340 0.74 -4.4 4,023 - -2.0 4,038 + -2.3 4,038 + -2.6 4,038 + -0.9 4,038 + -0.9 4,038 + -4.4 4,039 - -3.4 4,039 - -1.0 4,039 - +0.5 4,039 - -2.5 4,135 + +2.6 4,136 - +0.0 4,136 - +1.1 4,200 + -0.6 4,300 + LU632_RS25345 0.23 +0.1 4,443 - LU632_RS25345 0.46 +1.0 4,443 - LU632_RS25345 0.46 +0.6 4,487 - LU632_RS25345 0.53 -1.1 4,487 - LU632_RS25345 0.53 -3.0 4,489 + LU632_RS25345 0.54 -1.9 4,490 - LU632_RS25345 0.54 -2.6 4,490 - LU632_RS25345 0.54 -3.2 4,490 - LU632_RS25345 0.54 -2.2 4,612 + LU632_RS25345 0.73 +1.0 4,612 + LU632_RS25345 0.73 +0.9 4,612 + LU632_RS25345 0.73 +6.5 4,612 + LU632_RS25345 0.73 -0.4 4,613 - LU632_RS25345 0.74 +0.2 4,613 - LU632_RS25345 0.74 -2.9 4,613 - LU632_RS25345 0.74 -1.4 4,613 - LU632_RS25345 0.74 +1.6 4,613 - LU632_RS25345 0.74 +0.5 4,613 - LU632_RS25345 0.74 -1.9 4,613 - LU632_RS25345 0.74 -2.9 4,613 - LU632_RS25345 0.74 +2.7 4,614 + LU632_RS25345 0.74 -3.7 4,614 + LU632_RS25345 0.74 +1.7 4,614 + LU632_RS25345 0.74 -0.9 4,615 - LU632_RS25345 0.74 +0.2 4,692 + LU632_RS25345 0.86 -0.0 4,977 + LU632_RS25350 0.66 -1.5 4,988 + LU632_RS25350 0.70 -1.0
Or see this region's nucleotide sequence