Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24600 and LU632_RS24605 are separated by 239 nucleotides LU632_RS24605 and LU632_RS24610 are separated by 153 nucleotides LU632_RS24610 and LU632_RS24615 are separated by 445 nucleotides LU632_RS24615 and LU632_RS24620 are separated by 94 nucleotides
LU632_RS24600: LU632_RS24600 - ribbon-helix-helix domain-containing protein, at 4,688,902 to 4,689,093
_RS24600
LU632_RS24605: LU632_RS24605 - hypothetical protein, at 4,689,333 to 4,689,878
_RS24605
LU632_RS24610: LU632_RS24610 - IS3 family transposase, at 4,690,032 to 4,691,152
_RS24610
LU632_RS24615: LU632_RS24615 - hypothetical protein, at 4,691,598 to 4,691,789
_RS24615
LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450
_RS24620
Position (kb)
4690
4691
4692 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4689.042 kb on + strand, within LU632_RS24600 at 4689.042 kb on + strand, within LU632_RS24600 at 4689.043 kb on - strand, within LU632_RS24600 at 4689.252 kb on + strand at 4689.898 kb on - strand at 4689.908 kb on + strand at 4689.918 kb on + strand at 4689.919 kb on - strand at 4689.951 kb on + strand at 4689.951 kb on + strand at 4689.952 kb on - strand at 4689.952 kb on - strand at 4689.984 kb on - strand at 4691.159 kb on + strand at 4691.214 kb on + strand at 4691.214 kb on + strand at 4691.225 kb on - strand at 4691.225 kb on - strand at 4691.323 kb on - strand at 4691.464 kb on - strand at 4691.612 kb on - strand at 4691.887 kb on + strand at 4691.887 kb on + strand at 4691.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) remove 4,689,042 + LU632_RS24600 0.73 +0.2 4,689,042 + LU632_RS24600 0.73 -1.1 4,689,043 - LU632_RS24600 0.73 +0.8 4,689,252 + +0.4 4,689,898 - +2.8 4,689,908 + -1.0 4,689,918 + +0.5 4,689,919 - +1.2 4,689,951 + +0.3 4,689,951 + -1.6 4,689,952 - +1.3 4,689,952 - -0.2 4,689,984 - -2.0 4,691,159 + -1.0 4,691,214 + +1.2 4,691,214 + +0.8 4,691,225 - +0.0 4,691,225 - +0.6 4,691,323 - +1.2 4,691,464 - -0.8 4,691,612 - -0.1 4,691,887 + -1.2 4,691,887 + +1.7 4,691,889 + -2.4
Or see this region's nucleotide sequence