Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24375

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,649,149	+				-2.2
4,649,203	-				+0.2
4,649,363	-	tnpA	LU632_RS24380	0.60	+0.3
4,649,363	-	tnpA	LU632_RS24380	0.60	+0.3
4,649,375	-	tnpA	LU632_RS24380	0.64	-2.7
4,649,430	+	tnpA	LU632_RS24380	0.81	+0.6
4,649,440	+	tnpA	LU632_RS24380	0.85	+0.6
4,649,450	+	tnpA	LU632_RS24380	0.88	-0.9
4,649,451	-	tnpA	LU632_RS24380	0.88	+0.7
4,649,451	-	tnpA	LU632_RS24380	0.88	-1.7
4,649,451	-	tnpA	LU632_RS24380	0.88	+2.7
4,649,453	-	tnpA	LU632_RS24380	0.89	-0.2
4,649,453	-	tnpA	LU632_RS24380	0.89	+0.9
4,649,453	-	tnpA	LU632_RS24380	0.89	-0.5
4,649,455	-	tnpA	LU632_RS24380	0.90	+0.1
4,649,455	-	tnpA	LU632_RS24380	0.90	-0.5
4,649,455	-	tnpA	LU632_RS24380	0.90	+0.6
4,649,683	+				+1.3
4,649,683	+				+2.1
4,649,703	+				-1.4
4,649,703	+				-3.0
4,649,703	+				-1.1
4,649,704	-				-3.0
4,649,704	-				+0.5
4,649,881	-	ilvC	LU632_RS24385	0.15	-1.8
4,649,925	+	ilvC	LU632_RS24385	0.18	-1.0
4,649,944	+	ilvC	LU632_RS24385	0.19	-0.4
4,649,945	-	ilvC	LU632_RS24385	0.19	-0.4