Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24105

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,596,493	+				+0.8
4,596,495	+				+0.6
4,596,496	-				-0.2
4,596,524	-				-1.4
4,596,527	+				-0.9
4,596,527	+				+1.1
4,596,536	-	pldA	LU632_RS24100	0.11	+2.4
4,596,537	+	pldA	LU632_RS24100	0.11	+0.3
4,596,609	+	pldA	LU632_RS24100	0.19	-0.5
4,596,610	-	pldA	LU632_RS24100	0.19	+0.9
4,596,678	+	pldA	LU632_RS24100	0.27	-0.4
4,596,679	-	pldA	LU632_RS24100	0.27	+0.9
4,596,679	-	pldA	LU632_RS24100	0.27	-2.1
4,596,679	-	pldA	LU632_RS24100	0.27	-0.3
4,596,679	-	pldA	LU632_RS24100	0.27	-1.3
4,596,706	+	pldA	LU632_RS24100	0.30	-0.2
4,596,768	-	pldA	LU632_RS24100	0.37	+1.1
4,596,772	+	pldA	LU632_RS24100	0.38	-0.3
4,596,772	+	pldA	LU632_RS24100	0.38	+3.2
4,596,984	+	pldA	LU632_RS24100	0.62	+1.5
4,596,985	-	pldA	LU632_RS24100	0.62	-1.5
4,597,006	+	pldA	LU632_RS24100	0.64	+1.3
4,597,092	+	pldA	LU632_RS24100	0.74	-1.7
4,597,093	-	pldA	LU632_RS24100	0.74	-0.0
4,597,093	-	pldA	LU632_RS24100	0.74	-0.7
4,597,112	-	pldA	LU632_RS24100	0.76	-1.4
4,597,114	+	pldA	LU632_RS24100	0.77	-2.1
4,597,114	+	pldA	LU632_RS24100	0.77	-0.0
4,597,117	+	pldA	LU632_RS24100	0.77	-0.9
4,597,117	+	pldA	LU632_RS24100	0.77	+0.7
4,597,117	+	pldA	LU632_RS24100	0.77	+1.1
4,597,144	-	pldA	LU632_RS24100	0.80	-0.2
4,597,144	-	pldA	LU632_RS24100	0.80	-0.6
4,597,249	+				+0.7
4,597,249	+				-2.7
4,597,249	+				-0.4
4,597,434	-				-0.2
4,597,479	-				+0.4
4,597,523	+				+0.4
4,597,524	-				-0.8
4,597,524	-				-1.4
4,597,524	-				-0.4
4,597,567	-		LU632_RS24105	0.16	-2.2
4,597,913	-		LU632_RS24105	0.89	+0.3
4,597,968	+				-0.0
4,597,968	+				+1.0
4,597,980	+				-1.4
4,597,980	+				-0.7
4,597,981	-				-0.6
4,597,981	-				-3.8
4,598,044	+				-2.2
4,598,045	-				-1.4
4,598,071	+				-1.4
4,598,072	-				-1.8
4,598,072	-				-1.3
4,598,076	+				-0.3
4,598,082	+				+0.3
4,598,083	-				+0.3
4,598,220	-	rarD	LU632_RS24110	0.25	-1.2
4,598,247	+	rarD	LU632_RS24110	0.28	+0.0
4,598,311	+	rarD	LU632_RS24110	0.35	+1.3
4,598,319	+	rarD	LU632_RS24110	0.36	-2.7
4,598,483	+	rarD	LU632_RS24110	0.54	+0.1
4,598,483	+	rarD	LU632_RS24110	0.54	+1.9
4,598,483	+	rarD	LU632_RS24110	0.54	+1.2
4,598,484	-	rarD	LU632_RS24110	0.54	-0.2
4,598,484	-	rarD	LU632_RS24110	0.54	+3.3
4,598,484	-	rarD	LU632_RS24110	0.54	+1.3
4,598,485	+	rarD	LU632_RS24110	0.54	-1.6
4,598,485	+	rarD	LU632_RS24110	0.54	+1.4
4,598,485	+	rarD	LU632_RS24110	0.54	-2.7
4,598,485	+	rarD	LU632_RS24110	0.54	-0.0
4,598,485	+	rarD	LU632_RS24110	0.54	-1.0
4,598,486	-	rarD	LU632_RS24110	0.54	-1.6
4,598,486	-	rarD	LU632_RS24110	0.54	-0.9
4,598,486	-	rarD	LU632_RS24110	0.54	-0.7
4,598,658	+	rarD	LU632_RS24110	0.73	+2.4
4,598,658	+	rarD	LU632_RS24110	0.73	-0.6
4,598,658	+	rarD	LU632_RS24110	0.73	+1.6
4,598,658	+	rarD	LU632_RS24110	0.73	-0.5
4,598,660	+	rarD	LU632_RS24110	0.74	+2.1
4,598,661	-	rarD	LU632_RS24110	0.74	+0.0
4,598,661	-	rarD	LU632_RS24110	0.74	+2.7
4,598,661	-	rarD	LU632_RS24110	0.74	+0.7
4,598,820	+				-2.2
4,598,820	+				-2.0
4,598,821	-				-0.4
4,598,895	-				-2.3