Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23975

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,570,428	-				-1.6
4,570,436	-				+0.7
4,570,453	-				+0.5
4,570,535	-				-0.1
4,570,537	+				-1.2
4,570,537	+				-0.5
4,570,538	-				-1.9
4,570,542	-				+0.1
4,570,579	-				+2.1
4,570,579	-				-0.7
4,570,579	-				+1.0
4,570,660	-				+1.3
4,570,665	+				+0.5
4,570,669	-				+3.8
4,570,710	+				+3.4
4,570,711	-				+1.3
4,570,825	+	rfaH	LU632_RS23970	0.27	+0.3
4,570,828	-	rfaH	LU632_RS23970	0.27	+1.1
4,570,861	+	rfaH	LU632_RS23970	0.34	+5.9
4,570,882	+	rfaH	LU632_RS23970	0.38	+0.5
4,570,883	+	rfaH	LU632_RS23970	0.39	+2.5
4,570,883	-	rfaH	LU632_RS23970	0.39	+2.9
4,571,004	+	rfaH	LU632_RS23970	0.63	+2.5
4,571,040	+	rfaH	LU632_RS23970	0.71	+1.8
4,571,040	+	rfaH	LU632_RS23970	0.71	-0.5
4,571,041	-	rfaH	LU632_RS23970	0.71	+4.1
4,571,045	-	rfaH	LU632_RS23970	0.72	+3.0
4,571,045	-	rfaH	LU632_RS23970	0.72	+1.6
4,571,205	+				+2.0
4,571,311	+	tatD	LU632_RS23975	0.13	+0.2
4,571,311	+	tatD	LU632_RS23975	0.13	-0.1
4,571,380	-	tatD	LU632_RS23975	0.22	+1.1
4,571,465	+	tatD	LU632_RS23975	0.33	-0.7
4,571,665	+	tatD	LU632_RS23975	0.58	+1.0
4,571,666	-	tatD	LU632_RS23975	0.58	-2.7
4,571,729	+	tatD	LU632_RS23975	0.66	-2.1
4,571,813	+	tatD	LU632_RS23975	0.77	-0.0
4,571,813	+	tatD	LU632_RS23975	0.77	-1.7
4,571,813	+	tatD	LU632_RS23975	0.77	-0.1
4,571,903	+	tatD	LU632_RS23975	0.88	+0.3
4,571,903	+	tatD	LU632_RS23975	0.88	+1.7
4,571,903	+	tatD	LU632_RS23975	0.88	+1.4
4,571,904	-	tatD	LU632_RS23975	0.88	+1.3
4,571,904	-	tatD	LU632_RS23975	0.88	-0.6
4,571,904	-	tatD	LU632_RS23975	0.88	-2.1
4,571,904	-	tatD	LU632_RS23975	0.88	+0.2
4,571,987	+				+1.0
4,571,988	-				+0.6
4,571,988	-				-0.6
4,571,989	+				-1.3
4,572,062	-				-0.3
4,572,075	-				-0.3
4,572,075	-				+0.4
4,572,075	-				+1.8
4,572,126	-				-1.4
4,572,126	-				-1.0
4,572,279	+	tatC	LU632_RS23980	0.27	-2.3
4,572,280	-	tatC	LU632_RS23980	0.27	-3.9
4,572,283	+	tatC	LU632_RS23980	0.28	-7.3
4,572,283	+	tatC	LU632_RS23980	0.28	-4.0
4,572,284	-	tatC	LU632_RS23980	0.28	-3.7
4,572,284	-	tatC	LU632_RS23980	0.28	-4.5
4,572,381	+	tatC	LU632_RS23980	0.41	-5.4
4,572,489	-	tatC	LU632_RS23980	0.55	-5.0
4,572,534	-	tatC	LU632_RS23980	0.61	-3.9
4,572,657	+	tatC	LU632_RS23980	0.77	-6.6
4,572,658	-	tatC	LU632_RS23980	0.77	-5.1
4,572,658	-	tatC	LU632_RS23980	0.77	-3.0
4,572,700	-	tatC	LU632_RS23980	0.83	-5.5
4,572,726	-	tatC	LU632_RS23980	0.86	-5.5
4,572,726	-	tatC	LU632_RS23980	0.86	-3.7
4,572,759	+				-3.7
4,572,760	-				-4.2
4,572,768	+				-4.8
4,572,768	+				+0.6
4,572,959	+	tatB	LU632_RS23985	0.19	-3.1