Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23590

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,498,559	+				+0.5
4,498,560	-				-0.1
4,498,663	-		LU632_RS23585	0.14	-1.7
4,498,665	-		LU632_RS23585	0.14	-0.8
4,498,665	-		LU632_RS23585	0.14	-1.7
4,498,665	-		LU632_RS23585	0.14	-1.2
4,498,726	+		LU632_RS23585	0.24	-1.3
4,498,727	-		LU632_RS23585	0.24	+0.4
4,498,727	-		LU632_RS23585	0.24	+0.4
4,498,727	-		LU632_RS23585	0.24	-0.0
4,498,727	-		LU632_RS23585	0.24	+0.6
4,498,729	-		LU632_RS23585	0.24	-2.0
4,498,729	-		LU632_RS23585	0.24	+0.2
4,498,831	-		LU632_RS23585	0.40	+1.0
4,498,932	+		LU632_RS23585	0.55	-0.8
4,498,933	-		LU632_RS23585	0.55	+1.1
4,498,933	-		LU632_RS23585	0.55	-0.6
4,498,933	-		LU632_RS23585	0.55	-0.9
4,498,968	+		LU632_RS23585	0.61	+1.3
4,499,020	-		LU632_RS23585	0.69	+0.0
4,499,082	-		LU632_RS23585	0.78	+0.7
4,499,197	+				+0.1
4,499,198	-				-2.8
4,499,211	+				-1.8
4,499,211	+				-2.1
4,499,211	+				+1.0
4,499,211	+				-1.5
4,499,392	+				-1.0
4,499,392	+				+0.9
4,499,736	-		LU632_RS23590	0.25	+0.2
4,499,736	-		LU632_RS23590	0.25	-1.5
4,499,736	-		LU632_RS23590	0.25	-0.8
4,499,736	-		LU632_RS23590	0.25	+0.4
4,499,738	-		LU632_RS23590	0.25	-0.4
4,499,738	-		LU632_RS23590	0.25	+0.5
4,499,738	-		LU632_RS23590	0.25	-1.2
4,499,738	-		LU632_RS23590	0.25	+0.2
4,499,876	+		LU632_RS23590	0.40	+0.6
4,499,877	-		LU632_RS23590	0.40	+0.6
4,500,055	-		LU632_RS23590	0.60	-1.2
4,500,055	-		LU632_RS23590	0.60	-1.0
4,500,055	-		LU632_RS23590	0.60	-1.4
4,500,055	-		LU632_RS23590	0.60	-1.3
4,500,288	+		LU632_RS23590	0.85	+0.7
4,500,339	-				-0.4
4,500,523	-				-0.4
4,500,542	+				-0.7
4,500,543	-				+1.6
4,500,639	+				-0.3
4,500,639	+				-1.4
4,500,697	+				+1.2
4,500,743	+				-0.2
4,500,746	-				-1.5
4,500,830	-		LU632_RS23595	0.12	-0.0
4,500,869	+		LU632_RS23595	0.15	-0.6
4,500,870	-		LU632_RS23595	0.15	+1.2
4,500,870	-		LU632_RS23595	0.15	-0.9
4,500,929	-		LU632_RS23595	0.20	-0.0
4,500,929	-		LU632_RS23595	0.20	+0.6
4,500,959	+		LU632_RS23595	0.22	-0.1
4,500,959	+		LU632_RS23595	0.22	+0.2
4,500,959	+		LU632_RS23595	0.22	+0.4
4,500,959	+		LU632_RS23595	0.22	+0.2
4,500,959	+		LU632_RS23595	0.22	+0.9
4,500,960	-		LU632_RS23595	0.22	-3.3
4,500,960	-		LU632_RS23595	0.22	-0.4
4,500,960	-		LU632_RS23595	0.22	+1.2
4,500,960	-		LU632_RS23595	0.22	+1.6
4,500,960	-		LU632_RS23595	0.22	+0.2
4,500,962	-		LU632_RS23595	0.23	+0.5
4,501,022	-		LU632_RS23595	0.28	+0.1
4,501,108	-		LU632_RS23595	0.35	-0.2
4,501,161	+		LU632_RS23595	0.39	-0.1
4,501,175	+		LU632_RS23595	0.40	-2.2