Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23055

Experiment: Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS)
4,391,031	+				+3.2
4,391,031	+				+0.7
4,391,032	-				-0.1
4,391,036	-				-1.2
4,391,055	+				-1.5
4,391,056	-				-1.2
4,391,115	-				-1.2
4,391,115	-				-0.9
4,391,115	-				-0.0
4,391,225	-				-0.1
4,391,433	+				-0.6
4,391,433	+				+0.6
4,391,434	-				+1.8
4,391,446	+				-0.4
4,391,446	+				-0.8
4,391,480	+				+1.1
4,391,481	-				+1.9
4,391,642	+				-2.4
4,391,647	-				+0.1
4,391,700	+				-0.2
4,391,701	-				-0.2
4,391,723	+				+2.4
4,391,723	+				+0.2
4,391,724	-				-2.2
4,391,770	+				+0.8
4,391,821	-				+0.4
4,391,986	+				+0.2
4,392,007	+				+1.0
4,392,221	+		LU632_RS23055	0.17	-0.2
4,392,221	+		LU632_RS23055	0.17	-0.9
4,392,221	+		LU632_RS23055	0.17	-0.9
4,392,222	-		LU632_RS23055	0.17	+1.4
4,392,222	-		LU632_RS23055	0.17	+1.2
4,392,222	-		LU632_RS23055	0.17	+3.3
4,392,222	-		LU632_RS23055	0.17	-5.5
4,392,222	-		LU632_RS23055	0.17	-0.4
4,392,222	-		LU632_RS23055	0.17	-1.1
4,392,222	-		LU632_RS23055	0.17	-1.6
4,392,222	-		LU632_RS23055	0.17	-0.1
4,392,222	-		LU632_RS23055	0.17	-0.9
4,392,222	-		LU632_RS23055	0.17	+0.8
4,392,222	-		LU632_RS23055	0.17	-2.1
4,392,223	+		LU632_RS23055	0.17	-0.2
4,392,223	+		LU632_RS23055	0.17	-0.9
4,392,223	+		LU632_RS23055	0.17	+0.0
4,392,224	-		LU632_RS23055	0.17	+2.6
4,392,224	-		LU632_RS23055	0.17	-1.1
4,392,224	-		LU632_RS23055	0.17	-3.4
4,392,224	-		LU632_RS23055	0.17	-1.1
4,392,261	+		LU632_RS23055	0.20	-0.7
4,392,263	+		LU632_RS23055	0.20	+2.1
4,392,263	+		LU632_RS23055	0.20	-0.8
4,392,264	-		LU632_RS23055	0.20	+0.5
4,392,264	-		LU632_RS23055	0.20	-0.4
4,392,450	+		LU632_RS23055	0.35	-2.6
4,392,451	-		LU632_RS23055	0.35	-0.7
4,392,451	-		LU632_RS23055	0.35	-1.5
4,392,451	-		LU632_RS23055	0.35	-0.4
4,392,588	+		LU632_RS23055	0.46	+0.7
4,392,590	+		LU632_RS23055	0.47	+0.9
4,392,590	+		LU632_RS23055	0.47	+3.1
4,392,613	+		LU632_RS23055	0.48	+0.3
4,392,614	-		LU632_RS23055	0.49	+0.6
4,392,615	+		LU632_RS23055	0.49	+0.1
4,392,615	+		LU632_RS23055	0.49	-2.5
4,392,616	-		LU632_RS23055	0.49	+1.7
4,392,680	+		LU632_RS23055	0.54	-0.3
4,392,728	-		LU632_RS23055	0.58	+0.6
4,393,100	-		LU632_RS23055	0.88	+2.2
4,393,143	+				+0.5
4,393,309	+				-1.8
4,393,348	+				+0.4
4,393,349	-				-1.8
4,393,415	-				+0.3
4,393,517	-		LU632_RS23060	0.18	-1.6
4,393,559	-		LU632_RS23060	0.21	+0.2
4,393,627	-		LU632_RS23060	0.27	+2.1
4,393,627	-		LU632_RS23060	0.27	+1.7
4,393,648	+		LU632_RS23060	0.28	+0.8
4,393,649	-		LU632_RS23060	0.29	-1.9
4,393,651	-		LU632_RS23060	0.29	-2.0
4,393,651	-		LU632_RS23060	0.29	+2.0
4,393,707	+		LU632_RS23060	0.33	-0.1
4,393,751	-		LU632_RS23060	0.37	-0.7
4,393,779	+		LU632_RS23060	0.39	+0.1
4,393,780	-		LU632_RS23060	0.39	-1.1
4,393,806	+		LU632_RS23060	0.41	+1.4
4,393,808	+		LU632_RS23060	0.41	+0.6
4,393,808	+		LU632_RS23060	0.41	+0.6
4,393,809	-		LU632_RS23060	0.41	+0.0
4,393,943	-		LU632_RS23060	0.52	-2.1